Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 358 7e-94 seq2 132 5e-26 seq35 107 2e-18 seq6 107 2e-18 >seq11 Length=389204 Score = 358 bits (396), Expect = 7e-94 Identities = 515/719 (72%), Gaps = 8/719 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||| ||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 261508 TCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATCG--AGACGTA 261565 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | |||||||||||||||| |||| || || |||||||| || || Sbjct 261566 CAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAACGCCGGCAC 261625 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 261626 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 261685 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || |||||| | Sbjct 261686 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGCGGCATCGGTCT 261745 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| |||| | ||| || ||||||||| | | Sbjct 261746 CTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGA 261804 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | ||||||||| || || |||||| ||||||| | Sbjct 261805 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTCGACCAGGGCG 261864 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 261865 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 261924 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 261925 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 261984 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || |||||||| |||||||||||| | || ||| || ||| || ||| || Sbjct 261985 TTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 262044 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | ||||| |||| ||||||||||| | |||||||| || ||||| || ||| Sbjct 262045 TCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 262104 Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 ||| ||| || ||| | |||| ||| |||| | | || | || | Sbjct 262105 TGT-TCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCGCCCAGAAGCTC 262163 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || |||||| || |||||| |||||||| | || | |||| ||||||||| Sbjct 262164 TGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 262222 Score = 168 bits (186), Expect = 7e-37 Identities = 325/465 (70%), Gaps = 21/465 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || ||||| ||||| ||||||||||| ||||||| | Sbjct 262923 GGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTT 262982 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct 262983 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCC 263042 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || | || ||| | | ||| || ||||| | | | | Sbjct 263043 GGCGAGTTC--CAAG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTG 263099 Query 55655 TGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCT 55710 |||||| ||| ||| |||| ||| || | || ||||| || ||||||| | Sbjct 263100 TGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAACGT 263155 Query 55711 G---GAGATTCCTC-TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | || ||| || | |||||| || ||| ||||||||||||||| | |||| Sbjct 263156 CCCCGGTATCCCTGATGAG-CTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGA 263214 Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 || ||| | || ||| | || || || || |||| |||||||||||| ||||| || Sbjct 263215 AG-GTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTC 263273 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 ||| || | | | || | |||| || | | ||||||||||| ||||| ||| Sbjct 263274 AACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGG 263333 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 |||||||| ||||||||||| |||||||| || || ||||||||| Sbjct 263334 AAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 263378 >seq2 Length=1701455 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||||||| |||||||| ||| || ||||| || ||||| Sbjct 1664908 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 1664967 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 1664968 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 1665027 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||||||||| || || || |||||||| ||||||| ||||||| |||||| ||| Sbjct 1665028 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 1665087 Query 152209 G 152209 | Sbjct 1665088 G 1665088 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || ||||||||||||||| || Sbjct 1664908 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 1664967 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 1664968 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 1665027 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||||| || || || ||||| ||||||| ||||||| | ||||||| Sbjct 1665028 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 1665087 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 1665088 GAAAGCTGGCCGACCT 1665103 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 1667208 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 1667265 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 1667266 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 1667312 >seq35 Length=1438278 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT- 159001 ||||||||||| | ||||||||| || || || | ||| |||| || || | || || Sbjct 1231776 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 1231718 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | || | |||| |||||||| | |||||||| || ||||||| |||||||||||||||| Sbjct 1231717 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 1231658 Query 159062 CATCCATGTTCCCGAG 159077 |||| | ||| ||||| Sbjct 1231657 CATCGAGGTTGCCGAG 1231642 Score = 102 bits (112), Expect = 9e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||||||||| || || | | || | || || Sbjct 1231788 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 1231729 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 1231728 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 1231670 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 1231669 AGTCGCGCTTGGCATCGAGGTTGCCGAG 1231642 >seq6 Length=733724 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| | ||| ||||| || ||||| | |||||||| || || | ||| Sbjct 575566 AACTCGCGGACGGGGTGGGTCTCGCCGGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTGC 575625 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 ||||||||| |||||||| ||||||| || || | ||||| |||||||||||||| || Sbjct 575626 TGGAGCATGCGCCACATGCCCTCGACATAGTCGCGAGCGTGTCCCCAGTCGCGCTTCGCG 575685 Query 159064 TCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 575686 TCGAGGTTACCGAG 575699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215582747800