Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 203 4e-47 seq57 176 5e-39 seq2 165 9e-36 seq12 125 8e-24 seq59 116 4e-21 seq1 111 2e-19 seq4 98.7 1e-15 >seq11 Length=389204 Score = 203 bits (224), Expect = 4e-47 Identities = 491/737 (67%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | ||| | || ||||||||||| | || ||||||||||| | Sbjct 262225 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 262166 Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || | || ||| | | | | | | ||| | ||||| ||||||| | Sbjct 262165 CAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCT----CATACTTCTC 262110 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 | | |||| | | ||||| | | |||| | || |||| | || |||| ||||| Sbjct 262109 GAACAGCTCCTT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGC 262051 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256 | | ||| |||||||| || | ||| ||| || |||||| ||| || ||||||| Sbjct 262050 AGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGA 261991 Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316 |||| ||||| |||||| ||| ||||||| | || ||||| ||| | |||| Sbjct 261990 GGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 261931 Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG-- 81374 | || || | |||||| || ||||| ||||| || || | ||||| || ||| ||| Sbjct 261930 GGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCT 261871 Query 81375 -ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||| ||||||| |||||| || || || ||| | || || | ||| ||||||| Sbjct 261870 TGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGA 261811 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA 81493 | || | || | |||||||| || |||| ||| || | ||||| | ||| || Sbjct 261810 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGA 261751 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| || | | ||| || || | || ||| || | || || | Sbjct 261750 TCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGT 261691 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 | || |||||||| || | ||||| || | | | ||| || || | ||| ||| Sbjct 261690 AGATGCCCTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCACGACGAGAGCTGCGGG 261632 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672 | |||||| ||||| || || || | ||||| | || || || | ||||| Sbjct 261631 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATG 261572 Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732 |||| || || || | |||| ||| ||||| ||||| || |||| || |||||| Sbjct 261571 AGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGC 261512 Query 81733 ATAAACATGTACTGGGG 81749 || | ||||| ||| || Sbjct 261511 ATGAGCATGTGCTGCGG 261495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || |||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 263377 GCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 263318 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || || | | | || ||| || ||||| ||||| Sbjct 263317 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 263258 Query 80152 CAGATGAAAGCCCCACGATCTGC 80174 |||||| || || || || || Sbjct 263257 TCGATGAACGCTCCGCGGTCGGC 263235 >seq57 Length=1280291 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||||| Sbjct 959825 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 959766 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 959765 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 959706 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| |||||| || | || || || Sbjct 959705 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 959646 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || ||||||| ||||| || Sbjct 959645 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 959599 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| || || || ||||||||||| | || || || Sbjct 958829 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCG 958770 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||| | || || || ||| || || | ||||||||||| || Sbjct 958769 GGGAAGCAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACC 958710 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || || ||| | | ||||||||| Sbjct 958709 CTGCACCTCGTTTTGAGGTTGCGCGGTGGA 958680 >seq2 Length=1701455 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 1665103 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 1665044 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 ||||||||||||| || ||| ||| || |||||||| ||||| || ||| | ||| Sbjct 1665043 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 1664984 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 1664983 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 1664924 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 |||||||||||||||| |||| |||| | ||||||| | | ||| |||||||||| Sbjct 1664923 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 1664866 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| || | ||| | ||| |||||||| ||| | |||||||| Sbjct 1664865 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 1664817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 1667318 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 1667259 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 ||| || || ||||||||||| || |||||||| || |||||||||||| Sbjct 1667258 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 1667208 >seq12 Length=324675 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| ||||||||||| || || || || Sbjct 137362 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCG 137421 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| || || || | |||||| || || |||| ||| || || Sbjct 137422 GGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACC 137481 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||| || ||||| || Sbjct 137482 CTTCATCTCGTCTTGCGCCTACGCGGCGG 137510 >seq59 Length=937750 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| |||||||||||||| || || || Sbjct 935932 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 935991 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 935992 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 936051 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 936052 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 936080 Score = 105 bits (116), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| ||||| || ||||||||||| | || || || Sbjct 936242 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 936301 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 936302 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 936360 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 936361 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 936390 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| ||||| || ||||||||||| | || || || Sbjct 937404 AAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 937463 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 937464 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 937522 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 937523 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 937552 >seq1 Length=1786154 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| | || || || Sbjct 479940 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCG 479999 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || |||| ||||| || || Sbjct 480000 GGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACC 480059 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | |||||||||||||| Sbjct 480060 CTCCACCTCGTCCTCCGTCTTCGCGGTGG 480088 >seq4 Length=766227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || ||||| Sbjct 226780 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 226721 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || | || ||||| || || Sbjct 226720 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 226661 Query 27604 CTTCATCTAGTC 27615 ||||| || ||| Sbjct 226660 CTTCACCTCGTC 226649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309965138320