Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq57 125 6e-24 seq59 87.8 2e-12 >seq57 Length=1280291 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || ||||||||| | || || || || || || ||| Sbjct 959827 CCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGT 959768 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | ||||| || ||||| ||||| || ||||| || ||||| | Sbjct 959767 CGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACC 959708 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| || || | ||| || || || | || || || || |||| ||||||| Sbjct 959707 AGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACA 959648 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | || | || ||||| | || || ||||| Sbjct 959647 ACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGCAT 959596 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || |||||||| |||| || | ||||| || ||||| ||| Sbjct 958871 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 958812 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || ||||| || ||||| || || | ||| || || || | || ||| Sbjct 958811 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 958752 Query 27144 AGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 | || || ||| |||||||||||||||||||| |||||| | || | |||||| | Sbjct 958751 GGA-CGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 958693 Query 27203 TTTGCGGGGTGG 27214 ||||| ||||| Sbjct 958692 GTTGCGCGGTGG 958681 >seq59 Length=937750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || |||||||| |||| || | ||||| || ||||| ||| Sbjct 936200 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 936259 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || || || || ||||| || || | ||||||||| || | || ||| Sbjct 936260 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 936319 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || | ||| || |||||||| ||||||||||| | || |||| | ||| Sbjct 936320 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 936379 Query 27204 TTGCGGGGTGGCA 27216 | || ||||||| Sbjct 936380 CTCCGCGGTGGCA 936392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918068374720