Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq57 120 7e-22
seq59 107 5e-18
seq2 87.8 4e-12
>seq57
Length=1280291
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || ||||| || || || || || |||| |||||||| | | |||
Sbjct 959605 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTA 959664
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || ||||||||||| |||||||| | || || |||||||| || || ||
Sbjct 959665 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCC 959724
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || ||||| ||| ||| ||||| ||||| || | || || || |
Sbjct 959725 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGG 959784
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | |||||
Sbjct 959785 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 959825
Score = 95.1 bits (104), Expect = 3e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|||| || ||||| || || ||||| ||||| | |||||||| | || | ||
Sbjct 958693 CTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCG 958752
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| || ||||||||||| |||||||| | || || ||||||||||| || || ||||||
Sbjct 958753 TCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 958812
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| || ||||| ||| || ||||| ||||| || | || || || | ||||||
Sbjct 958813 TCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 958872
>seq59
Length=937750
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| |||||||| | | |||
Sbjct 936074 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 936015
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| |||||||| || || || |||||||| || || ||
Sbjct 936014 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 935955
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| ||||||||
Sbjct 935954 TCCTTGTCCTGGATCTT 935938
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || || | || || ||| | || | ||| ||
Sbjct 937537 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCC 937478
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| |||||||| || ||||||||
Sbjct 937477 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 937418
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656
|||||||| ||| || ||||||||||| ||
Sbjct 937417 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGA 937383
>seq2
Length=1701455
Score = 87.8 bits (96), Expect = 4e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567
|||||||| || || || || | || ||||| ||| | | | | |||||| ||
Sbjct 1353923 AGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGT 1353864
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
|||||||| |||||||| | || || ||||||||||| || || |||||||| ||| ||
Sbjct 1353863 TGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTC 1353804
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| ||| || | | ||| ||||| || | || || || | |||||||
Sbjct 1353803 TTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 1353753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530267962334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |