Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 >seq6 Length=733724 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 29629 CCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688 || ||||||||| || | ||||| || |||||||| ||||||||||| || || || || Sbjct 242221 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAG 242280 Query 29689 GGTGTGGACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 | ||| ||||| |||| || | |||||||| | || ||||||| ||| |||| Sbjct 242281 TTGGAGGATGAACTCATGCGGTATCGTG-TCGGTGACGAGGGCGATCATGTGCGTCAGGA 242339 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | | ||| ||||||||| |||||||| ||||| || | ||| | || | |||||| | Sbjct 242340 GGGCGTACGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACA 242399 Query 29808 GCTGGCACGAGAG 29820 |||| ||||| Sbjct 242400 TGAGGCAGGAGAG 242412 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 30033 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30092 ||||||| || ||||||| || ||| |||||| ||||| ||||| | | ||| | | Sbjct 242782 ACCCGTAGACGGGTCCCAAATCACCCACTTCCCGGTGCTGCAAGCCGCGCGAGTCGAGGA 242841 Query 30093 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30152 | |||| | |||||| | ||||||||||| || |||||||| | | | | || |||| Sbjct 242842 ACTCTCGGCTGCCGTTGCCATCCCAGATCTTGACGCCCTTCTCCGCCAACACCTTCGAGT 242901 Query 30153 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211 ||| | ||||| ||| ||||||| ||||||||| | || | | | ||||||| | Sbjct 242902 CGGTGCATCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAAAAGACGCGT 242960 Query 30212 TTGGTCGTGAGGAGGGG 30228 |||||||| | ||| || Sbjct 242961 TTGGTCGTCAAGAGCGG 242977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162898043046