Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq57 141 2e-28 seq59 140 7e-28 seq4 138 2e-27 seq2 96.9 7e-15 seq1 96.9 7e-15 seq12 95.1 3e-14 >seq57 Length=1280291 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||| || || |||||||| || || ||||| || ||| Sbjct 959635 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 959694 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| || || ||||||||||| || ||||| || || || | Sbjct 959695 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 959754 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||| | || || ||||| ||||| ||||| || || | ||||| ||| Sbjct 959755 TCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 959814 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 959815 AAGATCTGCAT 959825 Score = 125 bits (138), Expect = 1e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| |||||||| || ||||||||| || ||||| || || ||||| || || Sbjct 958716 TTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAA 958775 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| || || ||||| ||| || ||||||||||| || ||||| || || ||| | Sbjct 958776 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 958835 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| ||||| || | ||||| ||||| |||||| Sbjct 958836 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 958872 >seq59 Length=937750 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| ||||| || | ||| || || || ||||| ||||| Sbjct 936390 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 936331 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| |||||||| || || |||||| |||| Sbjct 936330 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 936271 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 936270 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 936211 Query 283053 TCGAGAGTGATC 283064 ||||| |||||| Sbjct 936210 TCGAGGGTGATC 936199 Score = 138 bits (152), Expect = 2e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| ||||| || | ||| || || || ||||| ||||| Sbjct 937552 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 937493 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| |||||||| || || |||||| |||| Sbjct 937492 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 937433 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| | |||||| Sbjct 937432 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 937373 Query 283053 TCGAGAGTG 283061 ||| ||| Sbjct 937372 GTGAGCGTG 937364 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 936044 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 935985 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 935984 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAAC 935929 >seq4 Length=766227 Score = 138 bits (152), Expect = 2e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| ||| |||||||| ||||| || || || ||||||||| Sbjct 226668 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 226727 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || ||||||||||| |||||||| || || ||| | Sbjct 226728 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 226787 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 226788 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 226823 >seq2 Length=1701455 Score = 96.9 bits (106), Expect = 7e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || | |||||||||||| | | | ||| ||| || ||||| ||||| || ||| Sbjct 1353908 TCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAAG 1353849 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||| || ||||||||||| ||| |||| | || ||| Sbjct 1353848 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGACGTCG 1353789 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 | ||| |||||||| | ||||| ||||| |||||| Sbjct 1353788 TAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 1353753 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||| ||||| | ||| || || ||||||||| ||||| || | || ||| ||| Sbjct 1664905 TTTGTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAAC 1664964 Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || | |||| | ||| ||| ||||||||||| |||||| | | ||| || | Sbjct 1664965 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 1665023 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| || ||||| || || | ||||||||||| || || ||| || | ||| || Sbjct 1665024 GACGATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTA 1665083 Query 273956 ACC 273958 || Sbjct 1665084 GCC 1665086 >seq1 Length=1786154 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || |||||||||||||| | Sbjct 480089 ACCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 480030 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| || || ||||| || Sbjct 480029 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGG 479970 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || ||||||||||| |||||||| || || || Sbjct 479969 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 479937 >seq12 Length=324675 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 |||| | |||||||| | |||||||||| ||||| || || ||||| || || || | Sbjct 137470 TTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGA 137411 Query 282973 AACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032 || || ||||| || || ||||||||||| |||||||| || || ||| | |||| Sbjct 137410 GCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGATGTCGA 137351 Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 | ||| || | | ||| |||||||||||| Sbjct 137350 TCGTGCTGGAGGACTTGACATCGAGAGTGATC 137319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738381907894