Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq59 154 1e-32
seq57 123 2e-23
seq1 118 1e-21
seq4 109 5e-19
seq12 91.5 1e-13
seq60 87.8 2e-12
seq7 86.0 6e-12
>seq59
Length=937750
Score = 154 bits (170), Expect = 1e-32
Identities = 146/184 (79%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||||||||||
Sbjct 936391 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 936332
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | ||
Sbjct 936331 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 936272
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| | || || | ||| | | | |||||| |||||| |
Sbjct 936271 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 936213
Query 41814 CCTC 41817
||||
Sbjct 936212 CCTC 936209
Score = 147 bits (162), Expect = 2e-30
Identities = 119/144 (83%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||||||||||
Sbjct 937553 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 937494
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | ||
Sbjct 937493 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 937434
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
|| || |||||||||| ||| ||
Sbjct 937433 AATGCCCTCCTTGTCCTGGATCTT 937410
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 935960 ATGCCCTCCTTGTCCTGGATCTT 935938
>seq57
Length=1280291
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||||||||| ||||| || || ||
Sbjct 959598 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 959657
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || ||||||||||| || ||||| |||| |||||| ||||| | ||
Sbjct 959658 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 959717
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || || | || | | | ||||| |||||| |
Sbjct 959718 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 959776
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 959777 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 959826
>seq1
Length=1786154
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||||||||| ||||| ||||| |||
Sbjct 480088 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 480029
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct 480028 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 479969
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 479968 ATGCCCTCCTTGTCCTGGATCTT 479946
>seq4
Length=766227
Score = 109 bits (120), Expect = 5e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| ||
Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| |||||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 226774
>seq12
Length=324675
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
||||||||||||| || || || ||||| || || ||| | |||| || |||||
Sbjct 137512 CGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTT 137453
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||| ||||| ||| ||||||||||| || ||||| || || ||||| ||||| | |
Sbjct 137452 CGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAG 137393
Query 41754 GAACGCTCTCCTTGTCCATGATTTT 41778
| | || |||||||||| ||| ||
Sbjct 137392 GGATGCCCTCCTTGTCCTGGATCTT 137368
>seq60
Length=931651
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690
|||| |||||||| || || | || ||| ||||||||| || | | | || |
Sbjct 23358 CACCCCCGCCGCGCAGGCGCAGCAGCAGGTGCAGCGTGGCATCACGCGCGACGCAGTACT 23417
Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
||| ||||||||| |||| || |||||||||||| |||| | |||||||| ||||| |
Sbjct 23418 CGGCGAGGGTGCGGGCGTCCTCCAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCAG 23477
Query 41751 CGGGAACGCTCTCCTTGTCCATGATT 41776
|| | || |||||||||| ||||
Sbjct 23478 GCGGGATGCCCTCCTTGTCCTGGATT 23503
>seq7
Length=604818
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| ||||||| || | || | | ||| ||||| ||||| ||
Sbjct 443558 GCCGCCCCGCAGACGGAACACCATCTGGATGGTAGTGTTGCGCTGGATGTTGTAGTCCGA 443499
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| || || | || ||||||||||||| |||| ||||||||||| ||||| || ||
Sbjct 443498 GAGCGTACGTCCATCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGCCGG 443439
Query 41755 AACGCTCTCCTTGTC 41769
|| || | ||||||
Sbjct 443438 AATGCCCAGCTTGTC 443424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303647493200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |