Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq12 104 5e-17
seq9 104 5e-17
seq6 104 5e-17
seq3 104 5e-17
seq2 104 5e-17
seq21 91.5 3e-13
>seq12
Length=734256
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 216163 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216222
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 216223 CCCACATTGGGC 216234
>seq9
Length=941111
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 444928 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 444869
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 444868 CCCACATTGGGC 444857
>seq6
Length=1028338
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 127870 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127929
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 127930 CCCACATTGGGC 127941
>seq3
Length=1448786
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 130508 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 130449
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 130448 CCCACATTGGGC 130437
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 143541 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 143600
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 143601 CCCACATTGGGC 143612
>seq2
Length=1536035
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 781316 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 781375
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 781376 CCCACATTGGGC 781387
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 795551 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 795492
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 795491 CCCACATTGGGC 795480
>seq21
Length=262679
Score = 91.5 bits (100), Expect = 3e-13
Identities = 112/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 230441 GTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499
|||| ||| || ||||||||||| || ||| ||||||||||||| ||||| || |||
Sbjct 18135 GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGAC 18076
Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559
|| | |||| || || || |||| || ||||||| | ||||||| || | |||
Sbjct 18075 CGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTT 18016
Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
|||||| | || ||| | | || ||||||||
Sbjct 18015 ATGGAGATGATCTCGATGGAGGGCAAGACCAA 17984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057822807303440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |