Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq50 104 3e-17 >seq50 Length=15404 Score = 104 bits (114), Expect = 3e-17 Identities = 360/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Plus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || || | |||||||| || | ||| |||| | | || || || ||||| || || Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | |||||||| || || || | | ||| || || || || || || Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| ||| || || | || || || || || || ||||| Sbjct 1555 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACC 1614 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368 || || || ||| | || ||||| | ||||| ||| || | ||| || |||||||||| Sbjct 1615 GATGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCT 1673 Query 54369 CTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGT 54426 | || || ||| |||| || | | ||| || | ||| | || || | || Sbjct 1674 CGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 1731 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || || || ||||||||||| | || || | || ||||| Sbjct 1732 GCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 1791 Query 54487 CGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||||||||| || || || || || | |||| || || ||||||||||| | Sbjct 1792 CGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATGA 1847 Query 54543 ACATGTGCTGAGGTC 54557 ||||||||| |||| Sbjct 1848 GCATGTGCTGCGGTC 1862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720946906240