Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21 136 4e-27 seq4 136 4e-27 seq18 122 9e-23 seq2 109 6e-19 seq19 104 2e-17 seq9 96.9 4e-15 seq1 89.7 5e-13 >seq21 Length=262679 Score = 136 bits (150), Expect = 4e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 18914 GGACATTTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGGCACTTCAT 18855 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | ||| || || ||||| ||||||||| ||||||||||| |||||||| |||| || Sbjct 18854 CTCGCATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGA 18795 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | ||||||||| | |||||||| || || |||||||| || |||||| Sbjct 18794 GAGGTTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGATC 18737 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||||||||||||||| || |||||| | | | | |||| ||| | || || | Sbjct 18507 AGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTCTTTGCGGAACGAC 18448 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 18447 TGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 18388 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||||||||| || ||| | |||||||| |||| ||| Sbjct 18387 GGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTC 18350 >seq4 Length=1400164 Score = 136 bits (150), Expect = 4e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| |||||| | | | ||| | ||| Sbjct 525407 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 525465 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| || Sbjct 525466 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 525525 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 525526 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 525577 Score = 105 bits (116), Expect = 7e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 525679 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 525738 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || || ||| | ||| | ||| ||||||| Sbjct 525739 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 525797 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||||||||| |||||||| || || | || | || |||| Sbjct 525798 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 525857 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || |||||||||||||| || ||| | |||| ||| || | | || Sbjct 525858 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 525917 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||||||| || | ||||| ||||| Sbjct 525918 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 525972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| || Sbjct 474407 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 474348 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || || || |||||||||||||| ||| | || || || || ||| || Sbjct 474347 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 474288 Query 40903 CG 40904 || Sbjct 474287 CG 474286 >seq18 Length=397515 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 320453 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 320512 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||||||||| | |||||| Sbjct 320513 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 320572 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||| || ||||| || || | || || || || |||||| Sbjct 320573 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 320632 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || ||| |||| Sbjct 320633 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 320667 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | |||||| | | |||| |||||| || |||| || Sbjct 321372 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 321430 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 321431 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 321490 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || |||||||| || ||||| | || ||||| || || ||| | Sbjct 321491 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 321550 Query 40905 CTTGAGGGGCGG 40916 ||| | || || Sbjct 321551 GTTGCGCGGTGG 321562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || |||| || Sbjct 321072 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 321130 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||| || | |||||||| || | |||| |||||| || ||||| || || Sbjct 321131 CAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 321190 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || || |||||||||||||| ||| | || || || || ||| |||| Sbjct 321191 CGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCG 321250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| || || | | |||| | || |||| |||||| || || | || Sbjct 320781 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACG-TCAAGGCCAAGATCCAGGA 320839 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||| ||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 320840 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 320899 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || || || ||||| ||| ||||||||||| | || || || || ||| |||| Sbjct 320900 TGGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 320959 >seq2 Length=1536035 Score = 109 bits (120), Expect = 6e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| || | |||| || Sbjct 485063 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 485122 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 ||||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | | Sbjct 485123 CGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGA 485182 Query 40886 CGCTGCATCTAGT 40898 | || || || || Sbjct 485183 CCCTCCACCTCGT 485195 >seq19 Length=354189 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 127352 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 127410 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || || Sbjct 127411 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 127470 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || ||||||||||| ||||||||| | || || || || || Sbjct 127471 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 127524 >seq9 Length=941111 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||||||||| | |||||||| || ||||| | || Sbjct 137285 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 137344 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | | Sbjct 137345 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 137404 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 | || ||||| || |||||| | | ||||||| Sbjct 137405 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 137437 >seq1 Length=1672916 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||| | | || ||||| |||||||| Sbjct 767119 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTGGAG 767060 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||| ||| | || | || ||||||||||| || || || Sbjct 767059 GACGCCCGCACCCTCGCCGAGTACTGCGTCGCGCGTGATGCCACGCTGCACCTGCTGCTG 767000 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | ||||| || Sbjct 766999 CGCCTGCGCGGCGGGGG 766983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218633258880