Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq18 134 1e-26
seq4 120 3e-22
seq19 91.5 1e-13
seq9 84.2 2e-11
seq2 84.2 2e-11
>seq18
Length=397515
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | | || ||| | ||| | || ||||| || || |||||||||||
Sbjct 320679 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 320620
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || |||||||||||| || || ||| |||| | |||||||| ||||||||
Sbjct 320619 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 320560
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|||||||||||||| ||| || || || | |||| ||||||| ||| |||
Sbjct 320559 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 320500
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740
|||| ||| | || |||||||| || || || || || ||||||||||
Sbjct 320499 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 320451
Score = 114 bits (126), Expect = 1e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | | || ||| | ||||| || |||||||| || |||||||||||
Sbjct 321262 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 321203
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||||||||||| || || ||| |||| | |||||||| ||||||||
Sbjct 321202 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 321143
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|||||||||||||| ||| || || || | |||| ||||||| |||||||
Sbjct 321142 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACC 321083
Query 118692 TCGACGGT 118699
|||| |||
Sbjct 321082 TCGAGGGT 321075
Score = 100 bits (110), Expect = 2e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| || ||||| || | ||| | || || || |||||||||||||||||
Sbjct 321562 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 321503
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| ||||| ||||| || || ||| |||| | |||||||| ||||| ||
Sbjct 321502 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 321443
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|||||||||||||| ||| || || || | |||| ||||| | |||||||
Sbjct 321442 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 321383
Query 118692 TCGACGGT 118699
|||| |||
Sbjct 321382 TCGAGGGT 321375
>seq4
Length=1400164
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| | | || ||| | ||||| || |||||||| || |||||||||||
Sbjct 474272 TACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 474331
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||||||||||| || || ||| |||||||||||||||| |||||||
Sbjct 474332 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAG 474391
Query 118630 GTATGCCCTCCTTGTC 118645
| ||||||||||||||
Sbjct 474392 GGATGCCCTCCTTGTC 474407
Score = 96.9 bits (106), Expect = 3e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || |||||||| || ||||| | |||||| |||||
Sbjct 473981 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 474040
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| | |||||||| || || || ||||||||||||||
Sbjct 474041 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 474100
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699
||| || || || | |||| ||||| | ||||||||||| |||
Sbjct 474101 AATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 474151
Score = 89.7 bits (98), Expect = 4e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || |||||||| || ||||| | |||||| |||||
Sbjct 472819 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 472878
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||| || || ||| |||| | |||||||| || || || ||||||||||||||
Sbjct 472879 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTC 472935
>seq19
Length=354189
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| || | |||||| ||||||||||| || ||
Sbjct 127512 GTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 127453
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| ||||||| |||||||| || || || |||||||||||||| || || ||
Sbjct 127452 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 127393
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699
|| | |||| ||||||| ||||||||||| |||
Sbjct 127392 ACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 127355
>seq9
Length=941111
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||||| | ||| || | || | || || || |||||| ||||| ||
Sbjct 137435 CCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTCG 137376
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| | ||||||||||| || || ||| | ||||| |||||||| ||||||||
Sbjct 137375 AGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGG 137316
Query 118632 ATGCCCTCCTTGTC 118645
||||||||||||||
Sbjct 137315 ATGCCCTCCTTGTC 137302
>seq2
Length=1536035
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| || | |||||| |||||||||||
Sbjct 485190 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTG 485131
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct 485130 CTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 485080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829934716896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |