Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18 134 1e-26 seq4 120 3e-22 seq19 91.5 1e-13 seq9 84.2 2e-11 seq2 84.2 2e-11 >seq18 Length=397515 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||| | ||| | || ||||| || || ||||||||||| Sbjct 320679 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 320620 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||||||||| || || ||| |||| | |||||||| |||||||| Sbjct 320619 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 320560 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||||| ||| ||| Sbjct 320559 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 320500 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 320499 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 320451 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||| | ||||| || |||||||| || ||||||||||| Sbjct 321262 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 321203 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||||||||| || || ||| |||| | |||||||| |||||||| Sbjct 321202 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 321143 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||||| ||||||| Sbjct 321142 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACC 321083 Query 118692 TCGACGGT 118699 |||| ||| Sbjct 321082 TCGAGGGT 321075 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| || ||||| || | ||| | || || || ||||||||||||||||| Sbjct 321562 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 321503 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | |||||||| ||||| || Sbjct 321502 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 321443 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||| | ||||||| Sbjct 321442 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 321383 Query 118692 TCGACGGT 118699 |||| ||| Sbjct 321382 TCGAGGGT 321375 >seq4 Length=1400164 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | || ||| | ||||| || |||||||| || ||||||||||| Sbjct 474272 TACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 474331 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || || ||| |||||||||||||||| ||||||| Sbjct 474332 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAG 474391 Query 118630 GTATGCCCTCCTTGTC 118645 | |||||||||||||| Sbjct 474392 GGATGCCCTCCTTGTC 474407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || |||||||| || ||||| | |||||| ||||| Sbjct 473981 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 474040 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| | |||||||| || || || |||||||||||||| Sbjct 474041 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 474100 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 ||| || || || | |||| ||||| | ||||||||||| ||| Sbjct 474101 AATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 474151 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || |||||||| || ||||| | |||||| ||||| Sbjct 472819 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 472878 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || ||| |||| | |||||||| || || || |||||||||||||| Sbjct 472879 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTC 472935 >seq19 Length=354189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | |||||| ||||||||||| || || Sbjct 127512 GTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 127453 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| || || || |||||||||||||| || || || Sbjct 127452 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 127393 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || | |||| ||||||| ||||||||||| ||| Sbjct 127392 ACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 127355 >seq9 Length=941111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||||| | ||| || | || | || || || |||||| ||||| || Sbjct 137435 CCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTCG 137376 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| | ||||||||||| || || ||| | ||||| |||||||| |||||||| Sbjct 137375 AGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGG 137316 Query 118632 ATGCCCTCCTTGTC 118645 |||||||||||||| Sbjct 137315 ATGCCCTCCTTGTC 137302 >seq2 Length=1536035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | |||||| ||||||||||| Sbjct 485190 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTG 485131 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||| |||| | |||||||| ||||| || |||||||||||||| Sbjct 485130 CTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 485080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829934716896