Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq50 196 1e-44 seq8 87.8 4e-12 >seq50 Length=15404 Score = 196 bits (216), Expect = 1e-44 Identities = 444/666 (67%), Gaps = 15/666 (2%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| ||||| || ||| | || |||||| | | || ||| Sbjct 1917 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 1858 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| || ||| || ||||| ||| ||| | || Sbjct 1857 CAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATC 1798 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || || | | || || ||| | ||||||||||||||| Sbjct 1797 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAAC 1738 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || || ||||| |||||||| || | | ||| | |||||||| Sbjct 1737 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 1678 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || |||||||| | ||||| ||| || || || || ||| Sbjct 1677 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCCGGC 1621 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||||||||| || ||||||||| |||| || ||||||||| || || || Sbjct 1620 GGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 1561 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || ||| | ||| | || || | | |||||| | | | || Sbjct 1560 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTC 1501 Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303 |||||| ||| ||||| ||| |||||||||| || | || ||||||| Sbjct 1500 GACCAGGGCGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 1444 Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363 ||||| || || |||||||| ||| | |||||| ||||||| ||| | | ||| Sbjct 1443 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 1384 Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423 || ||| | |||| | ||| ||| | ||||| | |||||| || ||| || || Sbjct 1383 CGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 1324 Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483 ||||| ||| | || | | || |||| || || | |||| ||| | |||||| | Sbjct 1323 GGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGAC 1264 Query 249484 GACTTC 249489 || ||| Sbjct 1263 GAGTTC 1258 >seq8 Length=976034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| |||||| || | ||||| |||||||| ||| | ||||| ||||||||||| Sbjct 817068 CCGCCGTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACTCAGGACGCGCAGTCT 817127 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||| ||||| | ||||||| ||||| | ||| | || ||| || | |||||| Sbjct 817128 GCCCTTCGCCGCATCATGGAGAACCACTCGAAGATCACGAGGTTCTGCTTGATCTGCAAC 817187 Query 254325 TACGTG 254330 |||||| Sbjct 817188 TACGTG 817193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765189328384