Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq50 315 6e-81
seq18 105 6e-18
seq4 98.7 9e-16
>seq50
Length=15404
Score = 315 bits (348), Expect = 6e-81
Identities = 515/740 (70%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || |||||||||||||||| | ||||| ||| || |||
Sbjct 1133 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 1192
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| |||| ||| ||| ||| | | || || | ||| ||||| | | ||| |
Sbjct 1193 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 1252
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321
| | || ||| | ||||| ||| |||||||| | | ||| || || | ||
Sbjct 1253 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 1310
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
| ||| || | || || || ||| || || || || ||||| || ||
Sbjct 1311 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 1370
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| ||||| ||||| |||||||| |||||| |||||| | || | || |
Sbjct 1371 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 1430
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| ||||
Sbjct 1431 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 1490
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
||||||| |||||||| || || |||||||||||||| | ||||| || | || ||||
Sbjct 1491 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 1550
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
| || |||| ||| || | ||| || | || || | |||||| | ||
Sbjct 1551 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 1610
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| ||||| ||| ||| || || || | |||||| || || |||||||||||||
Sbjct 1611 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 1670
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
||||||| ||| || || ||| ||| | ||| ||||| || | |||| | ||||
Sbjct 1671 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 1730
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
| |||| ||| || ||||| ||||||||||||||| | | |||||| || ||||
Sbjct 1731 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 1790
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
|||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | ||
Sbjct 1791 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 1850
Query 23862 TGTATTGAGGTCTCTCGACC 23881
||| || |||| |||| ||
Sbjct 1851 TGTGCTGCGGTCGCTCGGCC 1870
Score = 174 bits (192), Expect = 1e-38
Identities = 363/534 (68%), Gaps = 9/534 (2%)
Strand=Plus/Plus
Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCATAAC 22220
||||||||| |||||| ||||||| |||| || || |||||||| | | ||||
Sbjct 1 GCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGG- 59
Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280
||||| | | || || |||| |||||| ||| ||||| |||||||| || ||||
Sbjct 60 TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGG 119
Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
||| | | || | | ||| || ||||| || |||||||| | || |||
Sbjct 120 CGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGA 179
Query 22341 TCTC-TAACGG-TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398
||| | | || || || || |||||| || ||||| | |||||| ||
Sbjct 180 GCTCATCAGGGATACCGGG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTT 237
Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458
|| |||| |||||||||| ||| | || | || || || |||| ||
Sbjct 238 CTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGAC 297
Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518
||||| |||||||||| | ||| ||||| ||| |||||||| ||| |||| |||||
Sbjct 298 GACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAA 357
Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578
| || ||| || || |||||| |||||| ||||||||||||||||| | | ||
Sbjct 358 CGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAG 417
Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638
|||||| | | |||||||| | ||| || ||| | | | |||||||||||| ||
Sbjct 418 CGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTC 477
Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
| |||||| || || ||||| ||||| ||||| | |||| | ||||| ||
Sbjct 478 CGTCGGCGTGAC---GTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 528
>seq18
Length=397515
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| ||||
Sbjct 320452 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 320511
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 320512 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 320571
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| || || ||| | || || | ||| | ||||| ||
Sbjct 320572 GCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 320631
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||| ||||| || || ||
Sbjct 320632 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 320664
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
||||||| |||| || || ||||||||| |||| | ||||| | || |||
Sbjct 321371 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 321430
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || ||
Sbjct 321431 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 321490
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
| || | ||||| ||||||||||| |||||||| || || || ||
Sbjct 321491 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 321544
>seq4
Length=1400164
Score = 98.7 bits (108), Expect = 9e-16
Identities = 212/311 (68%), Gaps = 12/311 (4%)
Strand=Plus/Plus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || |||||||||||||||||||| || || ||||| ||||| | | |||
Sbjct 525679 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 525738
Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195
||| | | || || | | | || || | ||| || |||||||||||
Sbjct 525739 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 525797
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252
|||||| | ||||| ||||||| || || || || || || |||| |||||||
Sbjct 525798 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 525854
Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310
|| | |||| ||||||| ||||| || || ||| || | | ||| ||| |
Sbjct 525855 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 525914
Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370
|||| || ||| ||| | | || ||||| || |||||| | |||||||| | |||
Sbjct 525915 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 525972
Query 58371 GGCAAGACAAA 58381
|||||||| ||
Sbjct 525973 GGCAAGACCAA 525983
Score = 96.9 bits (106), Expect = 3e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
||||||| |||| || || ||||||||| |||| | ||||| | || |||
Sbjct 474155 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 474096
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || ||
Sbjct 474095 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 474036
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
| || | ||||| ||||||||||| || || ||||| || || ||||| |||
Sbjct 474035 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 473978
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 8/162 (5%)
Strand=Plus/Plus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970
|||||||| |||||| | ||| ||||| | ||||| || | |||| |||
Sbjct 525419 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 525474
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | || ||||||||||||||||||| || || ||||| || ||| || ||| | ||
Sbjct 525475 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 525534
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
|| ||| | ||||| |||||| |||||||||| || || ||
Sbjct 525535 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 525576
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | ||
Sbjct 472936 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 472877
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || | ||||| ||||||||||| || || ||||| || || ||||| ||
Sbjct 472876 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 472817
Query 31405 T 31405
|
Sbjct 472816 T 472816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765909656960
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