Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq50 107 3e-18
>seq50
Length=15404
Score = 107 bits (118), Expect = 3e-18
Identities = 363/556 (65%), Gaps = 16/556 (3%)
Strand=Plus/Plus
Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100
||| || |||| | || || || | ||| ||||| || |||||||| || || | ||
Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374
Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160
|| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434
Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220
|| || |||||||| || | ||| ||||| | | || || || ||||| || ||
Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494
Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280
||| || | ||| | |||||||| || || || | | ||| || || || || || ||
Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554
Query 66281 TGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339
||| || || || |||| ||| || || | || || || || || || ||||
Sbjct 1555 -GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGAC 1613
Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 66398
| || || || ||| | || ||||| | ||||| ||| || | ||| || |||||||||
Sbjct 1614 CGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 1672
Query 66399 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 66456
|| || || ||| |||| || | | ||| || | ||| | || || | |
Sbjct 1673 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 1730
Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516
| || || || || | || || || ||||||||||| | || || | || ||||
Sbjct 1731 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 1790
Query 66517 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 66572
||||||| || || || || || || | |||| || || |||||||||||
Sbjct 1791 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATG 1846
Query 66573 AACATGTGCTGAGGTC 66588
| ||||||||| ||||
Sbjct 1847 AGCATGTGCTGCGGTC 1862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172076009920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |