Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq50 120 4e-22 seq4 96.9 5e-15 >seq50 Length=15404 Score = 120 bits (132), Expect = 4e-22 Identities = 400/613 (65%), Gaps = 16/613 (3%) Strand=Plus/Plus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||||||||| || | || |||| | || || ||| |||| || | | | ||| Sbjct 1258 GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCA 1317 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 || || | | || || || | ||| ||||| || |||||||| || || | || | Sbjct 1318 GTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAA 1377 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 || | | | |||||| || || ||||| || ||||||||| | | || Sbjct 1378 GTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGAT 1437 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102 || | |||||||| || | ||| ||||| | | ||||| || ||||| || ||||| Sbjct 1438 GTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTG 1497 Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162 || | ||| | |||||||| || || || | | ||| || || || || || || || Sbjct 1498 GTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GT 1556 Query 80163 A-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221 | || || || |||| ||| || || | || || || || || || ||||| | Sbjct 1557 AGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGA 1616 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCT 80280 | || || ||| | || ||||| | ||||| ||| || | ||| || ||||||||||| Sbjct 1617 TGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCG 1675 Query 80281 ATGCTATCATCAATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTC 80338 || || || |||| || | | ||| || | ||| | || || | || | Sbjct 1676 ATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGC 1733 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | || || || | || || || ||||||||||| | || |||| || ||||||| Sbjct 1734 CGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACG 1793 Query 80399 TCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 |||| || || || || || || | |||| || |||||||||||||| | | Sbjct 1794 TCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATGAGC 1849 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 1850 ATGTGCTGCGGTC 1862 >seq4 Length=1400164 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 525580 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 525521 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124 || || |||||||| || || || ||||| || || || || | ||| || | || | Sbjct 525520 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 525461 Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| ||| ||||| | | ||||| ||||||||||| Sbjct 525460 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 525419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268009904320