Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq50 120 4e-22
seq4 96.9 5e-15
>seq50
Length=15404
Score = 120 bits (132), Expect = 4e-22
Identities = 400/613 (65%), Gaps = 16/613 (3%)
Strand=Plus/Plus
Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922
||||||||| || | || |||| | || || ||| |||| || | | | |||
Sbjct 1258 GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCA 1317
Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982
|| || | | || || || | ||| ||||| || |||||||| || || | || |
Sbjct 1318 GTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAA 1377
Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042
|| | | | |||||| || || ||||| || ||||||||| | | ||
Sbjct 1378 GTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGAT 1437
Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTG 80102
|| | |||||||| || | ||| ||||| | | ||||| || ||||| || |||||
Sbjct 1438 GTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTG 1497
Query 80103 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 80162
|| | ||| | |||||||| || || || | | ||| || || || || || || ||
Sbjct 1498 GTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GT 1556
Query 80163 A-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 80221
| || || || |||| ||| || || | || || || || || || ||||| |
Sbjct 1557 AGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGA 1616
Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCT 80280
| || || ||| | || ||||| | ||||| ||| || | ||| || |||||||||||
Sbjct 1617 TGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCG 1675
Query 80281 ATGCTATCATCAATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTC 80338
|| || || |||| || | | ||| || | ||| | || || | || |
Sbjct 1676 ATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGC 1733
Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398
| || || || | || || || ||||||||||| | || |||| || |||||||
Sbjct 1734 CGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACG 1793
Query 80399 TCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|||| || || || || || || | |||| || |||||||||||||| | |
Sbjct 1794 TCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATGAGC 1849
Query 80455 ATGTGCTGAGGTC 80467
|||||||| ||||
Sbjct 1850 ATGTGCTGCGGTC 1862
>seq4
Length=1400164
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/162 (75%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || ||
Sbjct 525580 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 525521
Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124
|| || |||||||| || || || ||||| || || || || | ||| || | || |
Sbjct 525520 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 525461
Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
||||| ||| ||||| | | ||||| |||||||||||
Sbjct 525460 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 525419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268009904320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |