Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq50 118 1e-21 >seq50 Length=15404 Score = 118 bits (130), Expect = 1e-21 Identities = 352/536 (66%), Gaps = 14/536 (3%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || | ||| ||||| || |||||||| || || | || | || | | | | Sbjct 1334 ACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACC 1393 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| || ||||||||| | | || || | |||||||| Sbjct 1394 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGC 1453 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| ||||| | | ||||| || ||||| || ||||| || | ||| | ||| Sbjct 1454 TCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCG 1513 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || || || | | ||| || || || || || || || || || |||| | Sbjct 1514 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCG 1573 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || || | || || || ||| || || ||||| || || || ||| | || Sbjct 1574 ATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTG 1633 Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| | ||||| ||| || | ||| || ||||||||||| || || ||| |||| Sbjct 1634 GAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 1692 Query 72381 -GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || | | ||| || | ||| | || || | || || || || || | || Sbjct 1693 CGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGTC 1750 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||||||||| | || |||| || ||||||||||| || || || Sbjct 1751 GGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 1810 Query 72499 ATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || || || | |||| || |||||||||||||| | ||| ||||| |||| Sbjct 1811 ATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATGAGCATGTGCTGCGGTC 1862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138461746880