Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq50 100 4e-16 seq4 95.1 2e-14 seq10 87.8 3e-12 >seq50 Length=15404 Score = 100 bits (110), Expect = 4e-16 Identities = 287/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | | || |||||| | ||||||| | | || Sbjct 1566 ACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGC 1507 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || || || ||||| | ||| ||||| | || || ||| Sbjct 1506 TACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGG 1447 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| | || || || |||| | ||||| ||| ||| || |||| || Sbjct 1446 CACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGC 1387 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | |||||||| | ||| |||||| | || || | |||||| |||| ||| | | Sbjct 1386 GCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAG 1327 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| ||||| ||| | ||||| | | | ||||||| || ||| || ||| Sbjct 1326 AACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGC 1267 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAGT 97165 || ||||| ||| || | | || ||| | ||||| || | | | || | | Sbjct 1266 GACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATT 1207 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | |||| || ||| | |||||| | ||| ||||| ||||| || | || | Sbjct 1206 C-CCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCT 1149 Query 97225 ACATTCTCTACAAGGA 97240 ||| ||||||||||| Sbjct 1148 TCATGCTCTACAAGGA 1133 >seq4 Length=1400164 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||||||||| |||||||||||||| || || || ||| ||||||| Sbjct 525479 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 525538 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 525539 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 525573 >seq10 Length=915309 Score = 87.8 bits (96), Expect = 3e-12 Identities = 216/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| ||| || ||||||| || | ||| |||||||| | | || || | Sbjct 828643 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGAGGCTGG 828702 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| ||||||||||||| || || || || Sbjct 828703 ATGAGCGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 828762 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| || ||| | | |||||| ||| |||| ||| | || ||| Sbjct 828763 CCCCACCTGGCGCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAACACCTCG 828822 Query 127627 A-TGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTA 127685 | | || |||| | |||||| || || ||||| || || || |||||||||||| Sbjct 828823 AGTTCG-TCGACGACCTCGTTGCCGCCGTAGTAGCGAGCGCCCGGGAGACCCTCCGAGTA 828881 Query 127686 CTTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCC 127743 ||||||| || |||| ||| | | || | | | |||| || | ||| | ||| || Sbjct 828882 CTTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCG 828939 Query 127744 GATGCGATCAACTCTAAGCC 127763 || ||||||| ||| | ||| Sbjct 828940 GACGCGATCAGCTCGAGGCC 828959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058384834880