Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq50 100 4e-16
seq4 95.1 2e-14
seq10 87.8 3e-12
>seq50
Length=15404
Score = 100 bits (110), Expect = 4e-16
Identities = 287/436 (66%), Gaps = 4/436 (1%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| |||||| || | | ||| | | || |||||| | ||||||| | | ||
Sbjct 1566 ACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGC 1507
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||||| || || || ||||| | ||| ||||| | || || |||
Sbjct 1506 TACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGG 1447
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||||| ||| | || || || |||| | ||||| ||| ||| || |||| ||
Sbjct 1446 CACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGC 1387
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
|| | |||||||| | ||| |||||| | || || | |||||| |||| ||| | |
Sbjct 1386 GCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAG 1327
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
||| ||||| ||| | ||||| | | | ||||||| || ||| || |||
Sbjct 1326 AACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGC 1267
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAGT 97165
|| ||||| ||| || | | || ||| | ||||| || | | | || | |
Sbjct 1266 GACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATT 1207
Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
| || | |||| || ||| | |||||| | ||| ||||| ||||| || | || |
Sbjct 1206 C-CCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCT 1149
Query 97225 ACATTCTCTACAAGGA 97240
||| |||||||||||
Sbjct 1148 TCATGCTCTACAAGGA 1133
>seq4
Length=1400164
Score = 95.1 bits (104), Expect = 2e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || ||||||||||| |||||||||||||| || || || ||| |||||||
Sbjct 525479 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 525538
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||||||||||||||||| | ||||||||||| ||
Sbjct 525539 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 525573
>seq10
Length=915309
Score = 87.8 bits (96), Expect = 3e-12
Identities = 216/320 (68%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
|||||||||| ||| || ||||||| || | ||| |||||||| | | || || |
Sbjct 828643 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGAGGCTGG 828702
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| || | ||| | ||||||||||||| ||||||||||||| || || || ||
Sbjct 828703 ATGAGCGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 828762
Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626
||||| || ||| | | |||||| ||| |||| ||| | || |||
Sbjct 828763 CCCCACCTGGCGCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAACACCTCG 828822
Query 127627 A-TGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTA 127685
| | || |||| | |||||| || || ||||| || || || ||||||||||||
Sbjct 828823 AGTTCG-TCGACGACCTCGTTGCCGCCGTAGTAGCGAGCGCCCGGGAGACCCTCCGAGTA 828881
Query 127686 CTTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCC 127743
||||||| || |||| ||| | | || | | | |||| || | ||| | ||| ||
Sbjct 828882 CTTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCG 828939
Query 127744 GATGCGATCAACTCTAAGCC 127763
|| ||||||| ||| | |||
Sbjct 828940 GACGCGATCAGCTCGAGGCC 828959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058384834880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |