Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq20 145 1e-30
seq2 132 8e-27
seq3 123 4e-24
>seq20
Length=267966
Score = 145 bits (160), Expect = 1e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 106398 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 106339
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| ||||||| | |||| || |||| |||| || | ||||||||||||
Sbjct 106338 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 106279
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| | | |||| || | | ||| ||||||||||| || || ||||| ||||||
Sbjct 106278 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 106219
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 106218 TCGCTCGACGTCGTCTACGC 106199
>seq2
Length=1536035
Score = 132 bits (146), Expect = 8e-27
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 793435 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 793376
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 793375 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 793316
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 793315 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 793256
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 793255 ACCTCGCTCGACGTCGTCTACGC 793233
Score = 127 bits (140), Expect = 3e-25
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 776899 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 776958
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 776959 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 777018
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | | ||| ||||||||||| || || ||||| |||
Sbjct 777019 CTCGAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 777078
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 777079 ACCTCGCTCGACGTCGTCTACGC 777101
>seq3
Length=1448786
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 144285 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 144344
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 144345 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 144404
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | || | || | || || ||||||||||| || || ||||| |||
Sbjct 144405 CTCGAGAACATCATTCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 144464
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 144465 ACCTCGCTCGACGTCGTCTACGC 144487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075119540984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |