Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq50 228 2e-54 >seq50 Length=15404 Score = 228 bits (252), Expect = 2e-54 Identities = 500/740 (68%), Gaps = 12/740 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | |||||||| || | || ||||| || || |||| Sbjct 1866 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 1807 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 |||||| || || || || || | | || ||| || ||||||||| |||| || Sbjct 1806 CGCGCGATCGAGACGTACAACCTCATGTCGGAGCG-GTACTTTACGCACGCCTCGCCGAC 1748 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | | || ||| | || || ||||| || | | ||||| Sbjct 1747 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAA 1688 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| || |||||||| |||| ||||| || |||| || || || || ||||||| Sbjct 1687 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 1628 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 || ||||| || ||| | ||||||||||| | || || || | || |||| || Sbjct 1627 GGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGT-ACATCGCCG 1569 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || |||||||| || | | |||||||| || |||| |||| || ||| Sbjct 1568 GCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGC 1509 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | |||||||||||||| || |||||| || ||||| || || || |||||||| Sbjct 1508 GCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGT 1449 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || ||||| || || ||||| || || ||||| || ||| || || ||||| | | Sbjct 1448 GGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCC 1389 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || || || |||||| ||| || ||| || | |||| || ||| |||| || || | Sbjct 1388 GCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGA-G 1330 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| | | ||| | ||||| ||||| ||| || || || ||| || | Sbjct 1329 CAGAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTAC 1270 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101 || ||||| | | || | ||| |||||||| |||||| || ||| Sbjct 1269 GGCGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGC---CAAGCGC 1213 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || |||||||| |||||||| |||| |||||| | || | ||| | ||||| || | Sbjct 1212 ACCATTCCCGCCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAAC 1153 Query 364162 CCCTATATGTTGTACAAAGA 364181 |||| ||| | ||||| || Sbjct 1152 CCCTTCATGCTCTACAAGGA 1133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352130468816