Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq50 228 2e-54
>seq50
Length=15404
Score = 228 bits (252), Expect = 2e-54
Identities = 500/740 (68%), Gaps = 12/740 (2%)
Strand=Plus/Minus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
|| || |||||||| ||| | |||||||| || | || ||||| || || ||||
Sbjct 1866 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 1807
Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566
|||||| || || || || || | | || ||| || ||||||||| |||| ||
Sbjct 1806 CGCGCGATCGAGACGTACAACCTCATGTCGGAGCG-GTACTTTACGCACGCCTCGCCGAC 1748
Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626
| | ||| || || || | | || ||| | || || ||||| || | | |||||
Sbjct 1747 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAA 1688
Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686
|||||| || |||||||| |||| ||||| || |||| || || || || |||||||
Sbjct 1687 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 1628
Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745
|| ||||| || ||| | ||||||||||| | || || || | || |||| ||
Sbjct 1627 GGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGT-ACATCGCCG 1569
Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805
|||| || |||||||| || | | |||||||| || |||| |||| || |||
Sbjct 1568 GCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGC 1509
Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865
| |||||||||||||| || |||||| || ||||| || || || ||||||||
Sbjct 1508 GCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGT 1449
Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925
|| ||||| || || ||||| || || ||||| || ||| || || ||||| | |
Sbjct 1448 GGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCC 1389
Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985
| || || || |||||| ||| || ||| || | |||| || ||| |||| || || |
Sbjct 1388 GCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGA-G 1330
Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044
||| | | ||| | ||||| ||||| ||| || || || ||| || |
Sbjct 1329 CAGAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTAC 1270
Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101
|| ||||| | | || | ||| |||||||| |||||| || |||
Sbjct 1269 GGCGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGC---CAAGCGC 1213
Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161
|| |||||||| |||||||| |||| |||||| | || | ||| | ||||| || |
Sbjct 1212 ACCATTCCCGCCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAAC 1153
Query 364162 CCCTATATGTTGTACAAAGA 364181
|||| ||| | ||||| ||
Sbjct 1152 CCCTTCATGCTCTACAAGGA 1133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303352130468816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |