Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq18 129 6e-25 seq50 122 8e-23 seq4 120 3e-22 seq2 104 2e-17 seq19 89.7 5e-13 seq9 82.4 7e-11 >seq18 Length=397515 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || ||||||||||| Sbjct 320680 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 320621 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 320620 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 320561 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | || || | ||||| | Sbjct 320560 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 320501 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 320500 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 320452 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | |||||| |||||||||||||||||||| Sbjct 321562 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 321503 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| || ||| Sbjct 321502 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 321443 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 321442 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 321383 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 321382 TCGAGGGT 321375 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 321263 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 321204 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 321203 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 321144 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 321143 AATGCCCTCCTTGTC 321129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || | ||| || || Sbjct 320972 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCGA 320913 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 320912 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 320853 Query 131127 GATTCCTTCTTTGTC 131141 |||||| || ||||| Sbjct 320852 GATTCCCTCCTTGTC 320838 >seq50 Length=15404 Score = 122 bits (134), Expect = 8e-23 Identities = 498/765 (65%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | | Sbjct 1121 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 1180 Query 145796 ATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCG 145852 || || || || | ||| || | | ||| ||| | ||| ||||| | || Sbjct 1181 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 1237 Query 145853 TATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTG 145912 || ||| | | ||||||| ||| || |||||| ||| |||||||| || | Sbjct 1238 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 1297 Query 145913 TTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972 || || | || | ||| ||||||| | ||| |||||||| || | || || Sbjct 1298 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 1357 Query 145973 ACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTT 146031 | ||| || || | | |||||||||||| | ||||| || ||| | || Sbjct 1358 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 1417 Query 146032 CAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091 | | || | | ||||||| ||||||||||| || | |||| ||||| || || Sbjct 1418 AGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCC 1476 Query 146092 TTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148 || ||| || |||||||| |||| || | ||||||| | ||||| | ||| Sbjct 1477 CGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCAT 1536 Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCAC 146208 ||| || |||| | | ||||||||| | || | |||| | ||| | Sbjct 1537 GGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGAT 1596 Query 146209 GCAATGAACATTCACGCCGAGACCGCCG-CCGTACTTGGATAT-AGCGGCGCA-GTCGCC 146265 | || | | |||| |||||| |||| |||||| || |||| |||| ||| Sbjct 1597 GTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCG-CGCACGTCTT- 1653 Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAG 146323 |||||| ||||||||||| || || ||| |||| || || || |||||||| Sbjct 1654 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGAC 1711 Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383 | | ||||| |||||| || || ||| | |||||| ||||||||||| Sbjct 1712 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAA---- 1767 Query 146384 TTTCGGCT----CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAAT 146439 | | ||| ||| | ||||| ||||| ||| | |||||||||||| || || Sbjct 1768 GTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGAT 1827 Query 146440 GCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||| | ||||| |||||||||||||| || || ||||| ||||| Sbjct 1828 GCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 1872 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| || ||||||||||| | ||||| || || | ||| |||||| | || Sbjct 293 TTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGC 352 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | |||||| ||| ||||| ||| ||||| ||||| ||||| ||| Sbjct 353 TCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAG 412 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | |||||||| | || | ||||| | | |||| ||||| Sbjct 413 ACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCAC 472 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 || |||||| | |||| ||||| |||||||||||| | ||| | ||| ||||| Sbjct 473 AGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 528 >seq4 Length=1400164 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 473963 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 474022 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 474023 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 474082 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 474083 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 474142 Query 131187 GTCGACGGT 131195 |||| ||| Sbjct 474143 CTCGAGGGT 474151 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 472801 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 472860 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 472861 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 472920 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 472921 AATGCCCTCCTTGTC 472935 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 474274 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 474333 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 474334 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 474393 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 474394 ATGCCCTCCTTGTC 474407 >seq2 Length=1536035 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 485213 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 485154 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 485153 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 485094 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 485093 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 485059 >seq19 Length=354189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 127513 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 127454 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 127453 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 127394 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 127393 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 127355 >seq9 Length=941111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||| || | ||| | |||||| ||| |||||| ||||| || Sbjct 137436 GCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTC 137377 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| | || | ||||||||||| ||||| Sbjct 137376 GAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGG 137317 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 137316 GATGCCCTCCTTGTC 137302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012280785920