Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq50 98.7 1e-15
seq4 84.2 3e-11
>seq50
Length=15404
Score = 98.7 bits (108), Expect = 1e-15
Identities = 361/556 (65%), Gaps = 16/556 (3%)
Strand=Plus/Plus
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| | || || || | ||| ||||| || |||||||| || || | ||
Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
|| || | |||||||| || | ||| ||||| | | || || || ||||| || ||
Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||| || | ||| | |||||||| || || || | | ||| || || || || || ||
Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554
Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| || || || || | ||| || || | || || || || || || ||||
Sbjct 1555 -GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGAC 1613
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409
| || || || ||| | || ||||| | ||||| ||| || | ||| || |||||||||
Sbjct 1614 CGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 1672
Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467
|| || || ||| |||| || | | ||| || | ||| | || || | |
Sbjct 1673 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 1730
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
| || || || || | || || || ||||| ||||| | || || | || ||||
Sbjct 1731 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 1790
Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583
||||||| || || || || || || | |||| || || |||||||||||
Sbjct 1791 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATG 1846
Query 63584 AACATGTGCTGAGGTC 63599
| ||||||||| ||||
Sbjct 1847 AGCATGTGCTGCGGTC 1862
>seq4
Length=1400164
Score = 84.2 bits (92), Expect = 3e-11
Identities = 117/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || ||
Sbjct 525580 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 525521
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-- 32825
|| || ||||| || || || || || || || || | || | ||| || | ||
Sbjct 525520 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 525461
Query 32826 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
||||| ||| ||||| | | ||||| |||||||||||
Sbjct 525460 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 525419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631303004800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |