Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq50 98.7 1e-15 seq4 84.2 3e-11 >seq50 Length=15404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 361/556 (65%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | |||||||| || | ||| ||||| | | || || || ||||| || || Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | |||||||| || || || | | ||| || || || || || || Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554 Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| || || || || | ||| || || | || || || || || || |||| Sbjct 1555 -GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGAC 1613 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409 | || || || ||| | || ||||| | ||||| ||| || | ||| || ||||||||| Sbjct 1614 CGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 1672 Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467 || || || ||| |||| || | | ||| || | ||| | || || | | Sbjct 1673 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 1730 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | || || || ||||| ||||| | || || | || |||| Sbjct 1731 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 1790 Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583 ||||||| || || || || || || | |||| || || ||||||||||| Sbjct 1791 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATG 1846 Query 63584 AACATGTGCTGAGGTC 63599 | ||||||||| |||| Sbjct 1847 AGCATGTGCTGCGGTC 1862 >seq4 Length=1400164 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 525580 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 525521 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-- 32825 || || ||||| || || || || || || || || | || | ||| || | || Sbjct 525520 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 525461 Query 32826 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 ||||| ||| ||||| | | ||||| ||||||||||| Sbjct 525460 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 525419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631303004800