Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 120 6e-22 seq12 114 3e-20 seq9 114 3e-20 seq6 114 3e-20 seq2 114 3e-20 seq8 109 1e-18 seq32 98.7 2e-15 seq5 96.9 7e-15 seq50 93.3 9e-14 seq21 86.0 1e-11 >seq3 Length=1448786 Score = 120 bits (132), Expect = 6e-22 Identities = 86/97 (89%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 130509 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 130450 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599 |||||||| |||| || |||| | ||||| ||||| Sbjct 130449 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 130416 Score = 114 bits (126), Expect = 3e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545 ||||| |||| | | |||||||||||||||||||||||||| | ||||||||||||| Sbjct 143523 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 143582 Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||||||| |||| Sbjct 143583 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 143612 >seq12 Length=734256 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 216162 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 216221 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 216222 CCCCACATTGGGC 216234 >seq9 Length=941111 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 444929 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 444870 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 444869 CCCCACATTGGGC 444857 >seq6 Length=1028338 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 127869 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 127928 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 127929 CCCCACATTGGGC 127941 >seq2 Length=1536035 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 781315 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 781374 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 781375 CCCCACATTGGGC 781387 Score = 114 bits (126), Expect = 3e-20 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 795551 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 795492 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600 ||||||| |||| || |||| | ||||| || ||| Sbjct 795491 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 795458 >seq8 Length=976034 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 ||||| || ||||| ||||||||||||||||| || ||| | |||||||| || || || Sbjct 78531 GGTTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCT-CTTCGA 78473 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| ||||||||| ||||| |||||| ||||| Sbjct 78472 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 78413 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | | || |||| ||||| |||||| Sbjct 78412 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACCTCGATCATCGTCTCGCACGACAG 78353 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 |||||||| | ||| ||| | | |||| | ||| Sbjct 78352 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 78316 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| | || ||||| || || |||| |||| | ||||||| Sbjct 77966 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 77907 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | |||||||| Sbjct 77906 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 77847 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| ||| || ||| ||||| Sbjct 77846 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCCAGTACAT 77791 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || || | ||||| || || ||| Sbjct 78879 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGCGCCAAGATCCTCCTCAAC 78820 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| | |||||||||| |||| || |||||| || | ||| ||| || Sbjct 78819 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGATCG 78760 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523 || ||| || || |||||||| || | ||||||||| | || || || ||| | | Sbjct 78759 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 78700 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | ||||| | || | || || ||||||||| ||||| Sbjct 78699 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 78661 >seq32 Length=59280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| ||||||||||| || |||| || | | ||||| ||| Sbjct 24015 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 23956 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| ||| Sbjct 23955 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 23896 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || | | ||| || | || | || || ||||| || |||||||| ||| Sbjct 23895 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 23838 Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041 |||| | ||| || ||||| |||| Sbjct 23837 TGGGCTTGCAGCAGGGCAAGACGTACA 23811 >seq5 Length=1355845 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 1185048 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 1185107 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || ||||||||||| |||||||| Sbjct 1185108 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 1185166 Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324 ||||||||||||||| | ||||| || Sbjct 1185167 CTTCCACCACATCGAGCAGCACCTCGA 1185193 >seq50 Length=15404 Score = 93.3 bits (102), Expect = 9e-14 Identities = 228/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || |||||||||||||| ||||||| |||| || || | | || || || Sbjct 5 GTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 64 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || | | Sbjct 65 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAG 124 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || |||| |||||||||||| |||||||| | ||| ||||| || Sbjct 125 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTC 183 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | | | || || || |||||||| || || || || || ||| ||||||||| Sbjct 184 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 243 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 244 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTG 303 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373 |||||| || ||||| || ||| |||| ||||| || ||| Sbjct 304 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTG 346 >seq21 Length=262679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 17989 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 18048 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | | || || || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 18049 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 18108 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 18109 GGTGGCGTTCATGCCGATCA 18128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835641114008