Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq18 179 7e-40
seq50 141 2e-28
seq4 127 4e-24
seq8 122 2e-22
seq12 98.7 2e-15
seq9 98.7 2e-15
seq6 98.7 2e-15
seq3 98.7 2e-15
seq2 98.7 2e-15
seq21 96.9 6e-15
>seq18
Length=397515
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || ||||| || |||||||| ||||| ||
Sbjct 320679 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 320620
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||||||| ||||| || | | || |||||||| ||
Sbjct 320619 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 320560
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| |||||||| ||||| ||||| | || || ||
Sbjct 320559 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 320500
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 320499 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 320453
>seq50
Length=15404
Score = 141 bits (156), Expect = 2e-28
Identities = 275/406 (68%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 30836 CGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGACTTCATAGAGGG 30895
||||||||||||||||||||| | ||||| |||| || | | | ||| | ||
Sbjct 4 CGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 63
Query 30896 CGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGC 30955
|| | | | || ||| | ||| | |||||| | |||| |||||||| || |
Sbjct 64 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGA 123
Query 30956 AAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTC 31015
||||| |||||| |||| || | |||||| | ||||||||||| |||||||||
Sbjct 124 GAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTC 183
Query 31016 AGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCAT 31075
| |||| || ||| ||||| || || || || || ||| |||||||||
Sbjct 184 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 243
Query 31076 GGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGG 31135
|| ||| |||| ||| || ||| ||||||||| | ||| || |||||| || |
Sbjct 244 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTG 303
Query 31136 GAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTC 31195
|||||| || || ||| |||||| |||| | || || ||| |||||| | |||||
Sbjct 304 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 363
Query 31196 TACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
| | || ||| || ||| || ||||| |||||| |||||
Sbjct 364 GTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCG 409
>seq4
Length=1400164
Score = 127 bits (140), Expect = 4e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| |
Sbjct 472802 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 472861
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| || || | |||||| |||||||| || | | || ||||| || |||
Sbjct 472862 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 472921
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||||||| ||||||||||| | || || |||
Sbjct 472922 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 472981
Score = 86.0 bits (94), Expect = 1e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | ||||| ||||| || |||||||| | |
Sbjct 525983 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 525924
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100
||| || |||||||| | | | ||||| |||||||||||||||||||||| |
Sbjct 525923 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 525864
Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160
|| ||||| ||||||||| || | | ||| | || ||| | ||| ||||
Sbjct 525863 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 525804
Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219
||| | ||||||| || | ||||| || ||| || || || || | |||
Sbjct 525803 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 525745
Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279
||| | ||| | ||||| |||| | |||||| ||||||||||| |||||
Sbjct 525744 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 525685
Query 10280 CTCGTT 10285
||||||
Sbjct 525684 CTCGTT 525679
>seq8
Length=976034
Score = 122 bits (134), Expect = 2e-22
Identities = 329/495 (66%), Gaps = 30/495 (6%)
Strand=Plus/Plus
Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573
|||||| || |||||| ||||||| |||||| || || ||||| || || ||||||||
Sbjct 78409 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 78468
Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633
|| || | |||||||||||| | ||| | |||||||| ||||| || || || || ||
Sbjct 78469 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 78528
Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687
||||| | | | | || ||| |||||| |||| |||| |||
Sbjct 78529 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 78584
Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742
| | | || || ||| | |||| | | ||| || || |||||| |
Sbjct 78585 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 78637
Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801
|| || | ||||| | | ||| ||| | |||||| || ||||| | ||| ||
Sbjct 78638 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 78690
Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861
|| || | |||||||||||| | ||| || || | ||||| || | |||||
Sbjct 78691 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 78750
Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921
|||||||| |||||| | || ||| ||||| | | || ||||||| | |||
Sbjct 78751 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 78810
Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981
| | | ||| |||||||||||| | || || || || |||||| ||| | ||||||
Sbjct 78811 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 78870
Query 225982 GTCCTCACCCTCCTC 225996
|||||| ||||||||
Sbjct 78871 GTCCTCGCCCTCCTC 78885
>seq12
Length=734256
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 216163 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216222
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 216223 CCCACATTGGGC 216234
>seq9
Length=941111
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 444928 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 444869
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 444868 CCCACATTGGGC 444857
>seq6
Length=1028338
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 127870 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127929
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 127930 CCCACATTGGGC 127941
>seq3
Length=1448786
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 130508 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 130449
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 130448 CCCACATTGGGC 130437
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 143541 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 143600
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 143601 CCCACATTGGGC 143612
>seq2
Length=1536035
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 781316 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 781375
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 781376 CCCACATTGGGC 781387
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 795551 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 795492
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 795491 CCCACATTGGGC 795480
>seq21
Length=262679
Score = 96.9 bits (106), Expect = 6e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 17984 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 18043
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
||||| || ||||| || | || ||| ||||| || ||||||||||||||||| |
Sbjct 18044 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 18101
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || |
Sbjct 18102 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 18161
Query 10159 TTTCGTTGGCGACCGCTTC 10177
||| | |||| |||||
Sbjct 18162 GCTCGATCTCGACGGCTTC 18180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621386215360
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