Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 179 7e-40 seq50 141 2e-28 seq4 127 4e-24 seq8 122 2e-22 seq12 98.7 2e-15 seq9 98.7 2e-15 seq6 98.7 2e-15 seq3 98.7 2e-15 seq2 98.7 2e-15 seq21 96.9 6e-15 >seq18 Length=397515 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || ||||| || |||||||| ||||| || Sbjct 320679 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 320620 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||||||| ||||| || | | || |||||||| || Sbjct 320619 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 320560 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||||| ||||| ||||| | || || || Sbjct 320559 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 320500 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 320499 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 320453 >seq50 Length=15404 Score = 141 bits (156), Expect = 2e-28 Identities = 275/406 (68%), Gaps = 0/406 (0%) Strand=Plus/Plus Query 30836 CGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGACTTCATAGAGGG 30895 ||||||||||||||||||||| | ||||| |||| || | | | ||| | || Sbjct 4 CGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 63 Query 30896 CGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGC 30955 || | | | || ||| | ||| | |||||| | |||| |||||||| || | Sbjct 64 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGA 123 Query 30956 AAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTC 31015 ||||| |||||| |||| || | |||||| | ||||||||||| ||||||||| Sbjct 124 GAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTC 183 Query 31016 AGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCAT 31075 | |||| || ||| ||||| || || || || || ||| ||||||||| Sbjct 184 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 243 Query 31076 GGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGG 31135 || ||| |||| ||| || ||| ||||||||| | ||| || |||||| || | Sbjct 244 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTG 303 Query 31136 GAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTC 31195 |||||| || || ||| |||||| |||| | || || ||| |||||| | ||||| Sbjct 304 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 363 Query 31196 TACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 | | || ||| || ||| || ||||| |||||| ||||| Sbjct 364 GTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCG 409 >seq4 Length=1400164 Score = 127 bits (140), Expect = 4e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| | Sbjct 472802 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 472861 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 472862 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 472921 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 472922 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 472981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | ||||| ||||| || |||||||| | | Sbjct 525983 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 525924 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100 ||| || |||||||| | | | ||||| |||||||||||||||||||||| | Sbjct 525923 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 525864 Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160 || ||||| ||||||||| || | | ||| | || ||| | ||| |||| Sbjct 525863 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 525804 Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219 ||| | ||||||| || | ||||| || ||| || || || || | ||| Sbjct 525803 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 525745 Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279 ||| | ||| | ||||| |||| | |||||| ||||||||||| ||||| Sbjct 525744 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 525685 Query 10280 CTCGTT 10285 |||||| Sbjct 525684 CTCGTT 525679 >seq8 Length=976034 Score = 122 bits (134), Expect = 2e-22 Identities = 329/495 (66%), Gaps = 30/495 (6%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || |||||| ||||||| |||||| || || ||||| || || |||||||| Sbjct 78409 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 78468 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || | |||||||||||| | ||| | |||||||| ||||| || || || || || Sbjct 78469 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 78528 Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687 ||||| | | | | || ||| |||||| |||| |||| ||| Sbjct 78529 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 78584 Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742 | | | || || ||| | |||| | | ||| || || |||||| | Sbjct 78585 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 78637 Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801 || || | ||||| | | ||| ||| | |||||| || ||||| | ||| || Sbjct 78638 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 78690 Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861 || || | |||||||||||| | ||| || || | ||||| || | ||||| Sbjct 78691 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 78750 Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921 |||||||| |||||| | || ||| ||||| | | || ||||||| | ||| Sbjct 78751 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 78810 Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981 | | | ||| |||||||||||| | || || || || |||||| ||| | |||||| Sbjct 78811 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 78870 Query 225982 GTCCTCACCCTCCTC 225996 |||||| |||||||| Sbjct 78871 GTCCTCGCCCTCCTC 78885 >seq12 Length=734256 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 216163 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216222 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 216223 CCCACATTGGGC 216234 >seq9 Length=941111 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 444928 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 444869 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 444868 CCCACATTGGGC 444857 >seq6 Length=1028338 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 127870 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127929 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 127930 CCCACATTGGGC 127941 >seq3 Length=1448786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 130508 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 130449 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 130448 CCCACATTGGGC 130437 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 143541 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 143600 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 143601 CCCACATTGGGC 143612 >seq2 Length=1536035 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 781316 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 781375 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 781376 CCCACATTGGGC 781387 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 795551 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 795492 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 795491 CCCACATTGGGC 795480 >seq21 Length=262679 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 17984 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 18043 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 ||||| || ||||| || | || ||| ||||| || ||||||||||||||||| | Sbjct 18044 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 18101 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || | Sbjct 18102 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 18161 Query 10159 TTTCGTTGGCGACCGCTTC 10177 ||| | |||| ||||| Sbjct 18162 GCTCGATCTCGACGGCTTC 18180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621386215360