Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq50 280 3e-70 seq4 161 2e-34 seq21 111 3e-19 >seq50 Length=15404 Score = 280 bits (310), Expect = 3e-70 Identities = 555/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Plus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| |||||||||||||||||||||||| || ||||||| |||||| |||||| Sbjct 1123 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 1182 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || | || | || | | | ||||| ||| || Sbjct 1183 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 1241 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | |||| ||| ||||||| ||| ||||||||| |||||||| | || | Sbjct 1242 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 1301 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || ||||||||||||||| |||| Sbjct 1302 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 1361 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 ||||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 1362 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 1421 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 1422 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 1481 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 |||||||||| |||||||| || | | || |||| | | ||| || | || | Sbjct 1482 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 1541 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | ||| | | | || |||| Sbjct 1542 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 1601 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | || | |||||||| |||||||||||| ||||| |||||| |||| Sbjct 1602 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 1661 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 1662 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 1721 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || |||||| |||||||| || ||| | Sbjct 1722 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 1781 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | ||| || |||| ||||||||||| ||| | ||| | Sbjct 1782 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 1838 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 1839 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 1895 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 1896 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 1926 Score = 143 bits (158), Expect = 5e-29 Identities = 569/890 (64%), Gaps = 68/890 (8%) Strand=Plus/Plus Query 243787 GCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTT 243846 ||| |||||||| || | |||| ||| || |||||| | ||| |||| | ||| Sbjct 1 GCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT--- 57 Query 243847 GAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGG 243906 ||||| | || | || || |||||| ||||| |||||||| ||| | Sbjct 58 --------GGTCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGC 108 Query 243907 CGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTA 243966 | || || |||| | | ||||| | ||||||| || ||||| || |||||||||| Sbjct 109 TCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTA 168 Query 243967 GATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGAT 244026 |||| ||||||| | || |||| || || |||||| | |||||| ||||| |||| Sbjct 169 GATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGAT 228 Query 244027 GAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTG 244086 || | | | ||| |||||||||||||| ||| || | ||| ||| | Sbjct 229 GATCGTGTTCTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAG 285 Query 244087 CC---TGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCT 244143 || ||| || || || ||||| || | || || ||||| ||||| |||| | Sbjct 286 CCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGT 345 Query 244144 GAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGG 244203 | |||||||| ||| || ||| || ||||| || ||| |||||||| || Sbjct 346 GTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGG 405 Query 244204 CG---ACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTT 244260 || | || ||| || ||| | | ||||||| |||| | ||| ||| || Sbjct 406 CGCGCAGACGAGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTT 453 Query 244261 CCAGTCCCACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCA 244319 | | || | | || | |||||| ||| | ||| | ||||| ||| |||||| | Sbjct 454 CAACTCGGCCCAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGGTCGTACTGCAAGA 512 Query 244320 GCCCCTTGCTGACGGG---GCTGC------CCTCGTAGGTCGGGTA------GGGACCGT 244364 | || | ||| |||| || || ||| ||| | ||||| ||| || Sbjct 513 GGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGC 572 Query 244365 CGCGCTGGGCCA--GCTTA---------CAGCTCTC-------GTCGAGGGCGGCGTAGT 244406 || | ||||| | || || || || | |||| ||||||| || Sbjct 573 CGGGGTGGGCGATGGCGTAGTCGCGGGCCATGTCGCACGACGACTCGATCGCGGCGTGGT 632 Query 244407 AGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGC 244466 |||| |||||||||||| ||| | || ||| |||| | || ||| || | | Sbjct 633 AGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGAC 692 Query 244467 CCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526 | ||||||| ||||||| || |||||||| ||||| ||||| || | ||| || Sbjct 693 GGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGA 752 Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586 |||| |||| ||| || |||||||| ||||| ||||||| | ||| | || Sbjct 753 AGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGT 812 Query 244587 TGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 || |||| | |||||||||| |||| || |||||||||||| Sbjct 813 TGTACGTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 862 >seq4 Length=1400164 Score = 161 bits (178), Expect = 2e-34 Identities = 226/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Plus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 525678 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 525737 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | |||||| ||||| | Sbjct 525738 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 525793 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 525794 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 525853 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043 ||||||||||||| |||||||| ||| ||| || |||| || | | | || || Sbjct 525854 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 525913 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||| ||| | | ||| |||||||||||||| | |||||| ||||| Sbjct 525914 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 525972 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 525973 GGCAAGACCAA 525983 Score = 152 bits (168), Expect = 1e-31 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||||| || |||||||||| |||||| | | | | ||| || Sbjct 525407 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 525464 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | |||||||| | || || || || ||||||||||||||||||||||||| ||| | | Sbjct 525465 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 525524 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 525525 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 525579 >seq21 Length=262679 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || | ||| Sbjct 18520 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 18461 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 18460 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 18401 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 ||||| ||||||||||||||| || || | ||||||||| | || |||||| Sbjct 18400 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 18347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||| ||| |||||| | Sbjct 18844 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 18785 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| | ||||| ||||| |||||||| |||||||| Sbjct 18784 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 18738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338161226880