Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 3e-14 seq32 91.5 3e-13 seq8 87.8 4e-12 >seq21 Length=262679 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 |||| || || ||| | ||||| || || | ||| | |||||| | ||||| | Sbjct 18198 GTCACCCAGATTATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTG 18139 Query 243553 CCATGCCGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 || | |||||| || ||||||||| | |||||| ||||||||||||| ||||| || Sbjct 18138 CCC-GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGC 18080 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 ||||| | | ||||||| || | || || ||||||| || ||||||| || | Sbjct 18079 GGACCGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGA 18020 Query 243672 CTTTATGGAGCTCATTTCG 243690 |||||||||| | || ||| Sbjct 18019 CTTTATGGAGATGATCTCG 18001 >seq32 Length=59280 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 298198 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 298257 ||||| ||||||||||| ||||| || |||||| ||| ||||| || || Sbjct 23764 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 23823 Query 298258 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 298314 || | ||| | || || |||| ||| ||| || |||||| || || || | Sbjct 23824 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 23882 Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 |||| || ||| ||||| || || | || ||||| || || ||||| || || || | Sbjct 23883 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 23940 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 ||||||||||| |||| || || | || || || | | || || || ||||| || Sbjct 23941 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 24000 Query 298435 CAGAATGAGAGTGCACATTTTGCTGTT 298461 ||| ||||| |||||| | |||| ||| Sbjct 24001 CAGGATGAGCGTGCACTTGTTGCCGTT 24027 >seq8 Length=976034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 |||||||| || || | ||||||||| | || |||||||| || || || || |||| Sbjct 78704 GAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCCGAT 78763 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 ||||| | ||||| ||||||||||||| ||||||||| || Sbjct 78764 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 78804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878756502800