Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq50 176 5e-39 seq12 100 3e-16 >seq50 Length=15404 Score = 176 bits (194), Expect = 5e-39 Identities = 489/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Plus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| |||||| | || | |||||||| |||| || ||| || || | | Sbjct 1130 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 1189 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 |||| | || | ||| || | ||| ||||| || ||||||| ||| ||||| | | Sbjct 1190 CAGAGCTTCTG-GGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 1248 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | | ||||| || || | |||| ||| || ||||||| | |||||||| Sbjct 1249 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 1308 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||| | ||| | || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 1309 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 1368 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||| | || || ||| | || || | || || || || | || | || Sbjct 1369 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 1428 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 1429 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 1488 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 || |||||| || || | ||| ||| || | ||||| ||||| || ||||| || Sbjct 1489 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 1548 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || ||| |||||| | | || | || | ||||| Sbjct 1549 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 1606 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 | ||| || || || ||| ||| ||||| |||||||| | |||| || ||||| Sbjct 1607 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 1666 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || ||||||||||| |||| | | || |||||||| ||| | || || Sbjct 1667 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 1726 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 115242 || || || ||||||||||| || || | ||||| | || |||| | ||||| Sbjct 1727 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 1785 Query 115243 ATCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | ||| ||||| || ||| | |||||| || ||||| || |||| || ||| || Sbjct 1786 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 1842 Query 115300 CATAAACATGTATTGGGGT 115318 ||| | ||||| || ||| Sbjct 1843 CATGAGCATGTGCTGCGGT 1861 >seq12 Length=734256 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855 || |||||| |||| || | |||||||||||||| |||||||| || | ||||||| Sbjct 158044 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158103 Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 158104 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158163 Query 8916 GTCAGGGAGTTCGTTGAG 8933 ||| | |||||||| ||| Sbjct 158164 GTCCGCGAGTTCGTCGAG 158181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352942911040