Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18 111 2e-19 seq19 91.5 2e-13 seq4 89.7 6e-13 >seq18 Length=397515 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 320644 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 320585 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||||| || | || |||||||||| ||| | || | |||| Sbjct 320584 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 320526 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 320525 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 320466 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 320465 CGAAGATCTGCAT 320453 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| || || || |||| || |||||||| || ||||| Sbjct 321526 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 321467 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | ||||||||||||| || | || |||||||||| ||| | || | |||| ||| Sbjct 321466 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 321409 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | ||||||| ||| || || |||| ||||| Sbjct 321408 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 321372 Score = 82.4 bits (90), Expect = 8e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||| | ||||| || |||| || |||||||| || ||||| Sbjct 321227 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 321168 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||||| || | || |||||||||| ||| | || | |||| || Sbjct 321167 GATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 321110 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | | |||||| ||| || || |||| ||||| Sbjct 321109 TTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 321072 >seq19 Length=354189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 127507 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 127448 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 127447 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 127389 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | |||||| ||| || || |||| ||||| Sbjct 127388 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 127352 >seq4 Length=1400164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||| | || | || ||| || || || |||||||| | Sbjct 474273 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 474332 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| || ||||| ||||| ||||||||||||| || Sbjct 474333 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 474392 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | || |||||||||| ||| || Sbjct 474393 GATGCCCTCCTTGTCCTGGATCTT 474416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212202465920