Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq50 241 1e-58 >seq50 Length=15404 Score = 241 bits (266), Expect = 1e-58 Identities = 423/615 (69%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | || |||| ||| || Sbjct 1926 TACTTCGGCTTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCC 1867 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||||||||| || |||| ||||| ||||| |||| || |||||| ||||||| | Sbjct 1866 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 1807 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCCACCCCG 93900 | | | | | || |||| ||| | |||| ||| ||| | ||| Sbjct 1806 CGCGCGATCGAGACGTACAACCTCATGTCGGA---GCGGTACTTTACGCACGCCTCGCCG 1750 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || || |||||||| || || ||| || ||| | || ||||| ||||| | |||| Sbjct 1749 ACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATG 1690 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 |||| |||||| ||| || || | ||||| |||||| || ||| |||||| || Sbjct 1689 AAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAG 1630 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 || || || ||||| || ||||| || | || || | || || |||||| | Sbjct 1629 ACGGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCC 1570 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || ||| ||| |||||| || |||| |||||||| || | ||||||| | ||| Sbjct 1569 GGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCG 1510 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| |||||||| || | | | ||| | ||||| |||| |||||||| Sbjct 1509 CGCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCG 1450 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| ||| | | ||| ||||||| || |||||||||||||| || || Sbjct 1449 TGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTC 1390 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | ||| | |||| || |||||| | || ||||| || ||| | || |||||| Sbjct 1389 CGCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAG 1330 Query 94321 AAAAACTCCGCCTGG 94335 | ||| || |||| Sbjct 1329 CAGAACGGCGACTGG 1315 Score = 138 bits (152), Expect = 1e-27 Identities = 226/318 (71%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || || ||||| || || || || |||||||||||| ||||||| ||||||| || Sbjct 408 GCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCCG 349 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| |||||| | |||| | | || || |||||||| || |||| ||| ||||| Sbjct 348 TACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAACCCC 289 Query 95224 CACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACT 95282 ||||| || ||||| | || | | || ||||| ||| | | ||||| || Sbjct 288 TGGCTCCTCCGCGACCTCGTCGAC-CGCGGCCTGTGGAACGACGCGATGAAGAA-CACGA 231 Query 95283 GCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGC 95341 | ||||| ||||||||| |||||||| |||| || || || || |||| |||| Sbjct 230 TCATCGCGCACAACGGCTCGATCCAGAACGTCCCCGGTATCCCTGATGAGCTCAA-GCGC 172 Query 95342 -TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 |||||||||| |||||||||||| ||||| || | |||||| | | |||| |||| Sbjct 171 ATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCGACCGC 112 Query 95401 GGGCCCTTCATCTGCCAG 95418 || | |||||| |||| Sbjct 111 GGAGCGTTCATCGACCAG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722655804480