Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq50 116 4e-21
seq4 100 3e-16
>seq50
Length=15404
Score = 116 bits (128), Expect = 4e-21
Identities = 434/662 (66%), Gaps = 25/662 (4%)
Strand=Plus/Plus
Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868
||| ||||| |||| || |||| |||| || ||||||||||||||| |||
Sbjct 1222 GCGACCCTCCTTCTCATACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 1281
Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCGTTGACGCGTC 153927
||||||||| || || || | || | ||| ||| | || | ||| ||
Sbjct 1282 GAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGC-TCGACACGCT 1340
Query 153928 GCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCG 153987
|||||| || || || | |||||| || | | | ||||||||| | ||||||
Sbjct 1341 CCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCT 1400
Query 153988 CGCCCATGTTGCGTTTCAGA--TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044
||| ||| || | || | ||| | | | | |||||||||||||||| || || |
Sbjct 1401 TGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGA 1457
Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATAT 154101
||||| ||| | || || ||||| |||||||| ||||||| |||| | | |
Sbjct 1458 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGT 1517
Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT 154161
||||| | ||||| | |||||| | |||| | | | |||||| || ||| |
Sbjct 1518 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 1577
Query 154162 TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT 154220
|||| ||||| | | || | | || ||||||||| |||| ||| ||
Sbjct 1578 ACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAG 1636
Query 154221 ATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC 154279
||| ||||| ||| ||||| ||||||||| ||||| ||||| |
Sbjct 1637 ATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGT 1695
Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCG-CGTTCCCGCCGAAAAGAGGGTGGGAC 154338
|| | ||| ||||| | | ||||| |||| ||| || || ||||| || ||
Sbjct 1696 GACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCG 1754
Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGGT---ACGTTTCGATGGCGTCTTCG 154394
||||||||||| | |||| |||| ||| |||| ||||| ||| ||
Sbjct 1755 AGGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 1810
Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454
|| || |||||||| ||||||| |||||| |||||||||||||||||||| || |||||
Sbjct 1811 ATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCC 1870
Query 154455 AC 154456
||
Sbjct 1871 AC 1872
>seq4
Length=1400164
Score = 100 bits (110), Expect = 3e-16
Identities = 216/312 (69%), Gaps = 11/312 (4%)
Strand=Plus/Plus
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| | || ||||||||||| || || ||||| |||||||| |||||| || |
Sbjct 525679 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 525736
Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
||| | | || || | | | || ||| || | |||| | ||||||||
Sbjct 525737 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGGT 525794
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680
| ||||| ||||||| | || | |||||||| ||| |||| | ||||||||| |
Sbjct 525795 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAG 525854
Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739
|| || |||||| ||||||||||||| ||||| || || || || ||| ||| ||
Sbjct 525855 CGACCTC-ATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCA-CTC-GG 525911
Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798
|| | | ||| || | || || ||||| || |||||| ||| || ||| | ||
Sbjct 525912 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGA 525971
Query 52799 GGGCAAGACCAA 52810
||||||||||||
Sbjct 525972 GGGCAAGACCAA 525983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261854111360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |