Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 125 7e-24 seq4 113 4e-20 seq21 102 8e-17 seq7 86.0 6e-12 seq9 84.2 2e-11 >seq18 Length=397515 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || ||||| || || || |||||||| Sbjct 320679 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 320620 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 320619 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 320560 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||||||| ||| || Sbjct 320559 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 320500 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 320499 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 320451 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| || | ||| || | || | || || || |||||||| |||||||| Sbjct 321563 TCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTG 321504 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 321503 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGG 321444 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || || ||||| |||| |||| ||||| | ||||| Sbjct 321443 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 321385 Query 127065 CTTCGACGGT 127074 | |||| ||| Sbjct 321384 CCTCGAGGGT 321375 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 321262 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 321203 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 321202 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 321143 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| ||||||| |||||| Sbjct 321142 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGAC 321084 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 321083 CTCGAGGGT 321075 >seq4 Length=1400164 Score = 113 bits (124), Expect = 4e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 472802 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 472861 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 472862 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 472921 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 472922 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 472980 Query 127066 T 127066 | Sbjct 472981 T 472981 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 473964 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 474023 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 474024 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 474083 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| ||||| | |||||| Sbjct 474084 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 474142 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 474143 CTCGAGGGT 474151 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 474274 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 474333 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 474334 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 474393 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 474394 ATGCCCTCCTTGTCCTGGATCTT 474416 >seq21 Length=262679 Score = 102 bits (112), Expect = 8e-17 Identities = 213/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA- 47299 |||||||| |||||| | || ||||| || |||||| |||||||||| ||||| | Sbjct 18288 AACGAGCTCATCTCGCGCGATGAAGGTCTTCACACCGACTTTGCCTGCCTTCTCTTTTCG 18229 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT--CAGCGACATGTTTGCCGAA 47357 || | | || | ||| || | || |||||||| || | | || | |||||| Sbjct 18228 CACCTCGAGCGCCGACCA------GCAC---CCCACCGTGTCACCCAGATTATCGCCGAA 18178 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||||| || ||| || || | | || || |||||| || | || ||| Sbjct 18177 GCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATG 18118 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| | ||| || |||||||||| || ||||| ||||| |||| || ||| Sbjct 18117 AACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTC 18058 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | | |||| | ||| | ||||||| || ||||| |||||| | | || ||| | Sbjct 18057 GGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATG 17998 Query 47538 GAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 17997 GAGGGCAAGACCAA 17984 >seq7 Length=1041051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || | || ||||| ||||| | | |||| ||| || || || || || Sbjct 755333 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 755274 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| ||||||| |||||||| ||||| || ||||||||||||||| | | || ||| Sbjct 755273 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 755214 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070 || | | || ||||||| |||||| |||| Sbjct 755213 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 755179 >seq9 Length=941111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||||| ||||| || | ||| | || || || |||||| ||||| || Sbjct 137438 GCGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCT 137379 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| || || ||||| || || ||| | || | |||||||| |||||| Sbjct 137378 TCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGA 137319 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || ||||||||||||||| ||| || ||||| Sbjct 137318 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 137285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500276949120