Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq50 167 3e-36
seq12 105 8e-18
>seq50
Length=15404
Score = 167 bits (184), Expect = 3e-36
Identities = 487/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Plus
Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610
|| |||||||||||||| | || | |||||||| |||| || ||| || || | |
Sbjct 1130 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 1189
Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669
|| | | || | ||| || | ||| ||||| || ||||||| ||| ||||| | |
Sbjct 1190 CAGAGCTTCTG-GGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 1248
Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729
|| ||| ||||| || || |||| ||| || ||||||| | || |||||
Sbjct 1249 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 1308
Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789
||| | ||| | || || ||| || |||| |||||||||||| || |||||||| ||
Sbjct 1309 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 1368
Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 1369 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 1428
Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACG 116906
|| | ||| || ||||||||||| || ||||| | |||| | ||| |||
Sbjct 1429 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 1488
Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966
|| |||||| || || | ||| || ||| | ||||| ||||| || ||||| ||
Sbjct 1489 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 1548
Query 116967 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024
| || | ||| || || || ||| |||||| | | | || | || | ||||||
Sbjct 1549 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 1606
Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084
| ||| || || || ||| ||| ||||| | |||||| | |||| || |||||
Sbjct 1607 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 1666
Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 1667 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 1726
Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 117203
|| || || ||||||||||| || || | ||||| | || |||| | |||||
Sbjct 1727 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 1785
Query 117204 ATCGTAGGTCTCCAAGACAGAGGG---AATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260
| ||| ||||| || | | | |||||| || ||||| || |||| | ||| ||
Sbjct 1786 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 1842
Query 117261 CATAAACATGTATTGGGGT 117279
||| | ||||| || |||
Sbjct 1843 CATGAGCATGTGCTGCGGT 1861
>seq12
Length=734256
Score = 105 bits (116), Expect = 8e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770
|| |||||| |||| || | |||||||||||||| |||||||| || | |||||||
Sbjct 158044 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158103
Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830
| | | ||||| || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 158104 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158163
Query 10831 GTCAGGGAGTTCGTTGAG 10848
||| | |||||||| |||
Sbjct 158164 GTCCGCGAGTTCGTCGAG 158181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506525142080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |