Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq50 107 3e-18 >seq4 Length=1400164 Score = 118 bits (130), Expect = 2e-21 Identities = 214/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || ||||| || |||| ||||||| | ||| ||| Sbjct 525983 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 525924 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| ||||| || ||||| | ||||||||| || |||||||| ||| Sbjct 525923 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 525864 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| || | || ||||||| | Sbjct 525863 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 525804 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG----TACCCCGGCTTGCC 159897 || ||||||||||| ||| | || || ||| |||| | |||| || Sbjct 525803 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGCGGC--GCT 525746 Query 159898 CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGA 159957 | | ||| | || |||||||| ||||||||| ||| || |||||||| || || Sbjct 525745 C-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGA 525691 Query 159958 GATGAACTCGTT 159969 ||||| |||||| Sbjct 525690 GATGAGCTCGTT 525679 >seq50 Length=15404 Score = 107 bits (118), Expect = 3e-18 Identities = 291/440 (66%), Gaps = 18/440 (4%) Strand=Plus/Plus Query 205262 ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCC 205321 |||||||||||||||||||| | | | ||| | ||||| || | |||||| || ||| Sbjct 1436 ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCC 1495 Query 205322 TGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCG 205381 ||||| || ||| | | |||| | || || ||||| || | | ||||| | | Sbjct 1496 TGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAG 1555 Query 205382 GTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCA 205441 |||||||||| | |||| |||||| || | | |||| ||| | || Sbjct 1556 TAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCG 1615 Query 205442 ATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGC 205500 || ||||| | ||||| ||| | |||||| ||||| || ||| ||||||||| | Sbjct 1616 ATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTC 1674 Query 205501 GATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----G 205556 ||| || |||||| || || || || ||||||| | |||| || | || | Sbjct 1675 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCG 1730 Query 205557 TGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----C 205612 |||| |||| ||||||||| || |||||| | ||| | ||||| ||| Sbjct 1731 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAG----TACCGCTCCGACATGAGG 1786 Query 205613 CTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATG 205672 |||| ||||| | | ||| ||| | ||| |||||| || || | |||| | |||| Sbjct 1787 TTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATG 1846 Query 205673 AAGAGGTGTTGAGGTCTCTC 205692 | | ||| || |||| ||| Sbjct 1847 AGCATGTGCTGCGGTCGCTC 1866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154325329280