Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18 138 1e-27 seq2 123 3e-23 seq4 122 1e-22 seq19 109 6e-19 seq7 87.8 2e-12 >seq18 Length=397515 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || |||||| ||||| ||||| || | Sbjct 320681 TGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 320622 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || ||||||||||| || ||||| ||||||||||||||||||| | Sbjct 320621 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 320562 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||||| | | | |||||| ||| || | Sbjct 320561 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 320502 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 320501 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 320453 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || | Sbjct 321264 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 321205 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| ||||||||||||||||||| | Sbjct 321204 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 321145 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||| ||||| ||| | | | |||||| ||| || Sbjct 321144 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCG 321086 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 321085 ACCTCGAGGGTGAT 321072 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || |||||| |||| || ||||| | Sbjct 320973 TGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCG 320914 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || ||||||||||| || ||||| ||||||||||||||||||| | Sbjct 320913 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 320854 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| |||||| ||||| ||| | | | |||||| ||| || Sbjct 320853 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCAGACGACTCA 320795 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 320794 ACCTCGAGGGTGAT 320781 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| || || ||||| |||| || |||||||| || ||||| Sbjct 321526 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 321467 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||||| ||| | || |||||||||| ||||| ||||| ||| Sbjct 321466 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 321408 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | ||||||| ||| || || || | ||||| Sbjct 321407 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 321372 >seq2 Length=1536035 Score = 123 bits (136), Expect = 3e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 485178 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 485119 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||||| || | || |||||||||| |||||| ||||| Sbjct 485118 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 485063 >seq4 Length=1400164 Score = 122 bits (134), Expect = 1e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 473962 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 474021 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 474022 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 474081 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||| ||||| ||| | | | ||||||| ||| || Sbjct 474082 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCG 474140 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 474141 ACCTCGAGGGTGAT 474154 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 472800 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 472859 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 472860 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 472919 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || |||||||||| |||||| ||||| Sbjct 472920 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 472952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 474274 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 474333 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| || Sbjct 474334 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 474393 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| |||||| Sbjct 474394 ATGCCCTCCTTGTCCTGGATCTT 474416 >seq19 Length=354189 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||||||||| || Sbjct 127507 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 127448 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 127447 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 127389 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 127388 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 127352 >seq7 Length=1041051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || | ||| ||||||||| | | ||| | || ||||| ||||| || ||||| Sbjct 755327 CTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAA 755268 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| ||| | || |||||||||| | |||| ||||| ||| Sbjct 755267 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGA-CGT 755209 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || | ||||| ||| || || || | |||||| Sbjct 755208 CGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 755172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237778237760