Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq9 260 2e-64
seq2 132 6e-26
seq6 125 9e-24
>seq9
Length=941111
Score = 260 bits (288), Expect = 2e-64
Identities = 637/964 (66%), Gaps = 5/964 (1%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
|| || || | |||||| || ||||| | || ||||| ||||| ||||| || |||||
Sbjct 216107 TCGCCGGTGAGGATGGCAGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 216048
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|||| || || | || || ||| || | || || | | | || | ||||
Sbjct 216047 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAGACGAGCTTCTGGACACGCGGG 215988
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || ||||| || ||||| | || || || | || | || || ||||| |||
Sbjct 215987 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCAATCTTCGAG 215928
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || || ||||| || ||||| ||||| | |||| || || |||
Sbjct 215927 TCGCGGAGGACCTTCTCGACGGGCTCCATGGTCGAGCGGAAGAGGTCCTGGCAGAGCTCC 215868
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| || || || ||||| || || || ||||| || | ||| ||| | | ||| || ||
Sbjct 215867 TCGAAGCGGGCGCGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGATC 215808
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| || || || || || | ||| || | || ||||| |||||||| || || || ||
Sbjct 215807 TCGATCGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAGGCGGTGCGG 215748
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| || || ||||| || | ||| || | || ||||| | || || || |||||
Sbjct 215747 AGGCGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTCG 215688
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| ||||| | ||| | || || || || || || | ||| || || ||
Sbjct 215687 GCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCGCCGCCGAGGTGGGTGTCGCCG 215628
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
||||| || ||||| || ||||| || | || || | | | ||| || || |||||
Sbjct 215627 GCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGTG 215568
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
|| || |||| ||| || ||||| |||||| | ||| | || ||||| ||||| |||
Sbjct 215567 CCGCCTCCCAAGTCGAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCCG 215508
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
|||||||| || || || || || || || || || || || ||| ||||| | ||
Sbjct 215507 TACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGATC 215448
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| || || || || || || || ||||| ||||| |||||||| ||||| || |||
Sbjct 215447 AAGCCGGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACG 215388
Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789
|| |||| | ||| | ||||| || | || || | || ||||| ||| ||
Sbjct 215387 ACGGCGTTGGCGACGGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAGG 215328
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849
|||||||| || ||||| || | || |||| ||| || || || | || ||
Sbjct 215327 ACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGAG 215268
Query 7850 ATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908
|| ||||| || ||| || | ||| ||||| ||| ||| | ||||| |||
Sbjct 215267 ATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGGA 215212
Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968
||||||| ||| | |||||| | |||||| || ||||| || ||||| || ||| |
Sbjct 215211 CTGGACCTCGGCGTCGGCAAACTTGCGTCCGATGAGGCGCTTGGCGTCAAAGACGGTGCT 215152
Query 7969 TTTG 7972
|||
Sbjct 215151 GTTG 215148
>seq2
Length=1536035
Score = 132 bits (146), Expect = 6e-26
Identities = 522/812 (64%), Gaps = 27/812 (3%)
Strand=Plus/Minus
Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072
|| || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct 1095250 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 1095191
Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132
| || || || | ||| ||| | || || | | || || || |||||
Sbjct 1095190 GACTTGTTGAGCTGGCGGCCGCCAAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 1095131
Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC- 7191
|| ||||| || ||||| | || || || | || || || || |||||||| | |||
Sbjct 1095130 CGGGTCGAGCCGCCGACGAGGACAATGTCGTCGACCTTGGACTTGTCGATCTTGGCGTCC 1095071
Query 7192 -TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248
|| || | | | |||| || || | ||||| ||| | | ||
Sbjct 1095070 TTCAAGACGCGCT----CGACGGGGTCGAGGGTCGAGCGGAAG--GTCGCGGCGTTGATC 1095017
Query 7249 --CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||| || || ||||| | || || | |||| || ||| | | | | ||| ||
Sbjct 1095016 TCCTCGAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCG 1094957
Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364
| || | ||| || || || || || || | || ||||| || ||||| |||||||
Sbjct 1094956 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCG 1094899
Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424
|| | ||| || || || || | || || || || || ||| || || | ||
Sbjct 1094898 AGCGGAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAA 1094839
Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
|||| | |||||| |||| |||| | || || || ||||| || | ||| ||
Sbjct 1094838 ACTCCTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCGCCGAGGTGGGTG 1094780
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || || ||||| ||||| |||||| || || || | | ||| |||||
Sbjct 1094779 TCTCCGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCG 1094720
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT 7596
||||| || || || ||||| || ||||| || || | || | | ||| ||
Sbjct 1094719 AACGTGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTC 1094660
Query 7597 --CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|| |||||||||||||||| || ||||| || || || || || || || || |
Sbjct 1094659 GCCTCGCCGAGACCGTACGCGATCGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACG 1094600
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
| |||||||| || || | || || || |||| | || ||||| ||||| ||||||
Sbjct 1094599 TCGAGGCCAGCGATCGTGCCGGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAG 1094540
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| |||||||| | ||| || | | |||| | ||| || | | | ||| || | ||
Sbjct 1094539 GCAGGGACCGTGATGACGGCCTTCTTGACCTCCTTGCCAATCTTGGCTTCGGCCGTCTCC 1094480
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806
|| | |||| |||||||| | || |||||
Sbjct 1094479 TTGAGCTTGGAGAGAACCATGGCCGAGATCTC 1094448
>seq6
Length=1028338
Score = 125 bits (138), Expect = 9e-24
Identities = 416/641 (65%), Gaps = 12/641 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || || || || | ||| || || || ||||| || ||| ||||| | ||
Sbjct 601340 TCAAAGTCCTCTCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACCTCAAACACGCCG 601281
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || || | | ||| || || ||||| || || || ||||| | | || | |
Sbjct 601280 TCGTCGATCGAGAGGAGCGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 601221
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| || | | |||| ||||| ||||||||||| || || ||||| || ||
Sbjct 601220 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 601164
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | | || || ||| ||||| || || || | || || || || || || ||
Sbjct 601163 TTGACGACGCGGAGGACGTTGAGGCCGGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 601104
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| | ||||| |||||||||||||| || ||||| |||| |||||| || | || ||
Sbjct 601103 TGGGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCAAGG 601044
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|||| || || | || ||||| ||| || ||||| | || | ||| || | |
Sbjct 601043 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGGGTG 600984
Query 7817 AAC-TGTT--TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873
||| | || || | || ||| | | || || |||| ||| | | | | |||
Sbjct 600983 AACGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCATCGAGCCG 600927
Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933
| | ||||| ||| | | |||| ||| ||||||| | ||| |||
Sbjct 600926 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 600867
Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993
| |||||| || ||||| || ||||| | ||||| | |||||| ||| ||||||
Sbjct 600866 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 600807
Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050
|| || ||||| ||||| || || | | | | | || |||||||| || |||
Sbjct 600806 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGACGAGGGGGAGAAGGCGACGTAGGACGGG 600747
Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091
|| | || || || |||||||| || || || || |||||
Sbjct 600746 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCG 600706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132101353920
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