Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq50 152 6e-32
seq32 93.3 5e-14
>seq50
Length=15404
Score = 152 bits (168), Expect = 6e-32
Identities = 486/741 (66%), Gaps = 21/741 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| |||||| |||| ||||| || || || ||||| |
Sbjct 1860 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 1801
Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
| ||||| ||| || ||||| | |||| || | ||||| | || || |||||
Sbjct 1800 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTT-ACGCACGCCTCGCCGACGCTCTT 1742
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| || || || || || | || || ||||| | | | ||||| ||
Sbjct 1741 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 1682
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| ||| | ||||| |||| ||| |||| || || | ||||| ||| ||| ||
Sbjct 1681 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGG 1622
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908
|| ||||| | ||||| | || | || | | | |||||| | | || ||
Sbjct 1621 CGGCATCGGTCTCTCGATCCACAACATCCGCGCGACC--GGCTCGTACATCGCCGGCACG 1564
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| || | || | || || || || ||||| ||||| | ||| ||| ||||||||
Sbjct 1563 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTAC 1504
Query 111969 GTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCATG 112021
|| |||| ||||| | |||| || | |||| |||| || ||||| ||
Sbjct 1503 GTCGACCA----GGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTG 1448
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081
|||||| || ||| | |||||||| || | || ||||| || | ||||||| ||
Sbjct 1447 GCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 1388
Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141
||||| | |||| || ||||||||||| || ||||||||| || | || ||| |
Sbjct 1387 CGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCA 1328
Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
|| ||| | ||| | ||||| || || | | |||||||||| ||| ||| | | ||
Sbjct 1327 GAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGG 1268
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGG 112260
|| ||||| | | || | | ||||| ||| | || |||| || | ||| ||
Sbjct 1267 CGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCA-AGCGCACCA 1209
Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319
| || || | || | | ||| | || || ||| || | || |||||| || | ||
Sbjct 1208 TTCCCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCC 1150
Query 112320 TATATGCTTTACAAAGACGCC 112340
| ||||| ||||| ||||||
Sbjct 1149 TTCATGCTCTACAAGGACGCC 1129
>seq32
Length=59280
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970
||| || || || |||||||||||||||| |||||||| || || | |||||||| ||
Sbjct 23911 CTTTCCGCGGAGCGGGAAGACACCGTAGTTGTCGCGACCGACGACGGCGAGACCCGAGAC 23970
Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019
||||||| || || || || ||||| |||| |||||| || ||||||
Sbjct 23971 GGCGAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCACTTG 24019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620741717183360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |