Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq8 87.8 2e-12 >seq3 Length=1448786 Score = 134 bits (148), Expect = 2e-26 Identities = 275/404 (68%), Gaps = 11/404 (3%) Strand=Plus/Minus Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650 ||||||||||||| || ||| |||||||||| ||| || ||||| |||||| | Sbjct 1181793 CGAAACCGTCCATCTCGACGAGGAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC 1181734 Query 11651 GCATAC------CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 || || | | |||| |||| | |||| ||||||||||| |||||||| | Sbjct 1181733 -CAAACTGTCCGCCCTTGCCACGAGCTTTT--CCGATCGCGTCAATCTCGTCGATGAAGA 1181677 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| ||||| ||| ||||| |||| || || || ||||| |||| || | Sbjct 1181676 TGATGCACGGCGCGTTCTTCTTGGCCTGGGCGAAGAGGTCTCGGACACGGCTCGCACCGA 1181617 Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGAC 11823 | || ||||||||||| ||||| | | | | || || || | |||||| || | Sbjct 1181616 CTCCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCT 1181558 Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883 || || ||| | || |||||||| ||||| || ||||| || | || | ||| | | Sbjct 1181557 TCGCCTGCGGTCGCCTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATG 1181498 Query 11884 GCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCC 11943 ||||| ||||| ||||||||||| | |||| | || || ||||||||||| | Sbjct 1181497 GCGCCGCGGGGAATCTTGGCACCGAGGCGCTCGTAGTGTTCCGGGTTCTTGAGGAACTTG 1181438 Query 11944 ACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAAC 11987 || | |||| | ||||||||||| ||| || || |||| Sbjct 1181437 ACGAACTCCATGATCTCCTCCTTGGCCTCGTCCATTCCGGCAAC 1181394 >seq8 Length=976034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 205/306 (67%), Gaps = 15/306 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| |||||||||| ||||| | || | || Sbjct 708966 GAAGCCGTCCATCTCGGTGAGGAGCTGGTTGAGGGTCTGCTT---------GTGGAAGCT 709016 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 | | || ||| ||||| |||||| ||||| | ||| |||||||| ||||| Sbjct 709017 CTGGTCTTTTGGCGAGCGCTTGCCACCGACGGCGTCGAGCTCGTCGATGAAGACGATGGC 709076 Query 11712 CGGTTGGTTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || ||| || || | || ||| || || || ||||| ||| || ||||| Sbjct 709077 GGGAGCGTTCTTGCGGGCAGCAGT--GAAGAGCTCGCGCACACGGCGCGCGCCGACACCG 709134 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 ||| ||||||| |||| | | |||| | | || | |||||| ||| | ||| || Sbjct 709135 ACGTACATCTCGTCGAACTCGGACCCAGA-CGCCGAGAAGAAGGGCACACCGGCCTCGCC 709193 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || |||||||||||||| || ||||| || | |||| || ||| |||| Sbjct 709194 TGCGACGGCACGCGCGAGGAGAGTCTTGCCGGTACCGGGAGGGCCAGTCAGGAGGACGCC 709253 Query 11889 ACGGGG 11894 || || Sbjct 709254 GCGAGG 709259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975352126400