Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq3 134 2e-26
seq8 87.8 2e-12
>seq3
Length=1448786
Score = 134 bits (148), Expect = 2e-26
Identities = 275/404 (68%), Gaps = 11/404 (3%)
Strand=Plus/Minus
Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650
||||||||||||| || ||| |||||||||| ||| || ||||| |||||| |
Sbjct 1181793 CGAAACCGTCCATCTCGACGAGGAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC 1181734
Query 11651 GCATAC------CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704
|| || | | |||| |||| | |||| ||||||||||| |||||||| |
Sbjct 1181733 -CAAACTGTCCGCCCTTGCCACGAGCTTTT--CCGATCGCGTCAATCTCGTCGATGAAGA 1181677
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| ||||| ||| ||||| |||| || || || ||||| |||| || |
Sbjct 1181676 TGATGCACGGCGCGTTCTTCTTGGCCTGGGCGAAGAGGTCTCGGACACGGCTCGCACCGA 1181617
Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGAC 11823
| || ||||||||||| ||||| | | | | || || || | |||||| || |
Sbjct 1181616 CTCCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCT 1181558
Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883
|| || ||| | || |||||||| ||||| || ||||| || | || | ||| | |
Sbjct 1181557 TCGCCTGCGGTCGCCTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATG 1181498
Query 11884 GCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCC 11943
||||| ||||| ||||||||||| | |||| | || || ||||||||||| |
Sbjct 1181497 GCGCCGCGGGGAATCTTGGCACCGAGGCGCTCGTAGTGTTCCGGGTTCTTGAGGAACTTG 1181438
Query 11944 ACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAAC 11987
|| | |||| | ||||||||||| ||| || || ||||
Sbjct 1181437 ACGAACTCCATGATCTCCTCCTTGGCCTCGTCCATTCCGGCAAC 1181394
>seq8
Length=976034
Score = 87.8 bits (96), Expect = 2e-12
Identities = 205/306 (67%), Gaps = 15/306 (5%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||| |||||||| || ||||| |||||||||| ||||| | || | ||
Sbjct 708966 GAAGCCGTCCATCTCGGTGAGGAGCTGGTTGAGGGTCTGCTT---------GTGGAAGCT 709016
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711
| | || ||| ||||| |||||| ||||| | ||| |||||||| |||||
Sbjct 709017 CTGGTCTTTTGGCGAGCGCTTGCCACCGACGGCGTCGAGCTCGTCGATGAAGACGATGGC 709076
Query 11712 CGGTTGGTTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769
|| ||| || || | || ||| || || || ||||| ||| || |||||
Sbjct 709077 GGGAGCGTTCTTGCGGGCAGCAGT--GAAGAGCTCGCGCACACGGCGCGCGCCGACACCG 709134
Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828
||| ||||||| |||| | | |||| | | || | |||||| ||| | ||| ||
Sbjct 709135 ACGTACATCTCGTCGAACTCGGACCCAGA-CGCCGAGAAGAAGGGCACACCGGCCTCGCC 709193
Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888
|||| ||| || |||||||||||||| || ||||| || | |||| || ||| ||||
Sbjct 709194 TGCGACGGCACGCGCGAGGAGAGTCTTGCCGGTACCGGGAGGGCCAGTCAGGAGGACGCC 709253
Query 11889 ACGGGG 11894
|| ||
Sbjct 709254 GCGAGG 709259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975352126400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |