Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq50 188 1e-42 seq4 96.9 6e-15 >seq50 Length=15404 Score = 188 bits (208), Expect = 1e-42 Identities = 541/821 (66%), Gaps = 27/821 (3%) Strand=Plus/Plus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||||| ||||||||||||||||| ||||| ||| ||||| | ||| ||| | || || Sbjct 1124 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATG 1183 Query 221879 TTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || |||||| | ||||| || | || | |||| | |||||| ||| ||||| Sbjct 1184 GCGTACCAGAGCT-TCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTC---CTTCTCATA 1239 Query 221938 CCCGGTATAGAGCATGTCA---AACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | | || || || |||| || ||||| |||||| ||||| || | Sbjct 1240 CT---TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTC 1296 Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054 ||| || || | || ||||| ||| | | ||| | || |||||||||||| || Sbjct 1297 GGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGG 1356 Query 222055 GATCCACAGCGCCTGAAAGAG-ATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTT 222111 ||||| || || ||||| | || | ||| | ||||||| ||||| ||| || Sbjct 1357 AATCCAGAGGGC---AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTT 1413 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | || || | ||||| || ||||| |||||||||||||| || |||| ||| | || Sbjct 1414 GCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGC 1473 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAG 222231 ||| || ||||||||||| ||||| || || | | | |||| | | ||| || Sbjct 1474 GCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAG 1533 Query 222232 GGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCT 222291 | || | | ||||| || ||||| ||||| ||||||| ||| || | Sbjct 1534 CATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCG 1593 Query 222292 CAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTT 222351 | ||| | || | ||||| || ||||| || ||||| | ||||| |||| Sbjct 1594 GATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTT 1653 Query 222352 GAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGA 222411 ||| ||||| ||||||||| || ||||| ||||| | | | || || || ||||| Sbjct 1654 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGA 1713 Query 222412 CATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 | ||| | | | | | |||||| || ||||| || |||||| |||||||| | Sbjct 1714 GAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCG 1773 Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCAT 222531 | ||||| || | ||||||||| | | | | |||| ||| ||||| || | Sbjct 1774 CTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGAC 1833 Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC-CCTTGGAGCTGGA----G 222586 ||| | |||| ||||| ||| || | ||| || | ||||| | | || | Sbjct 1834 CGCGACACGCATGAGCATGTGCTGCGGTCGCTC----GGCCACCTTGCCG-TCGAGGCGG 1888 Query 222587 AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 ||||||||||| || || |||||||| || |||||||| Sbjct 1889 AGCAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAGTT 1929 >seq4 Length=1400164 Score = 96.9 bits (106), Expect = 6e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| ||| |||||| |||||| | | |||||| | | | ||||||| || Sbjct 525407 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCT-CGGAC-GAGCGCTCCG 525464 Query 25870 TTT--GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | | |||||||| || || || || || || || ||||||||||| ||| ||| |||| Sbjct 525465 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 525524 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAG 25953 | ||| ||||||||||||||||| || Sbjct 525525 TCGCGTCCATCTTCTGGCTCAAGAAG 525550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843778270720