Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq9 264 1e-65 seq18 179 5e-40 seq19 150 2e-31 seq4 150 2e-31 seq3 102 1e-16 >seq9 Length=941111 Score = 264 bits (292), Expect = 1e-65 Identities = 871/1343 (65%), Gaps = 21/1343 (2%) Strand=Plus/Plus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 215155 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 215214 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 215215 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 215269 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 215270 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 215329 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 215330 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 215389 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 215390 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 215447 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || |||| || ||| || | || ||||| || || || || || || || || || Sbjct 215448 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 215507 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | ||||| || | || || || Sbjct 215508 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 215567 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| || || Sbjct 215568 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 215627 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || || || || || || || || || || |||||| | Sbjct 215628 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 215686 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 215687 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 215745 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | | Sbjct 215746 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 215805 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || |||||||| || | || ||||| || || || Sbjct 215806 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 215865 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 215866 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 215925 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 215926 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 215985 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | | || ||||||| || || ||||| || Sbjct 215986 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 216045 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || || || ||||| |||||||| || ||| | || Sbjct 216046 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 216104 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| || || || || || || || || || | || Sbjct 216105 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 216162 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 216163 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 216222 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | |||| || || || |||| || || || || || || || Sbjct 216223 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 216282 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || ||||| || ||| |||| | ||||| ||| | || || || | || || | Sbjct 216283 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 216342 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || ||||| | || |||||| || ||| Sbjct 216343 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 216402 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 || || || || || |||||| | ||| ||||||| | | ||||| || | ||||| Sbjct 216403 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 216462 Query 196790 GTGATTACCAATGACAAGGGGCG 196812 || ||||| ||||||| ||| Sbjct 216463 ACCATCACCAACGACAAGGTGCG 216485 >seq18 Length=397515 Score = 179 bits (198), Expect = 5e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 320453 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 320512 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| ||| Sbjct 320513 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 320572 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || ||||| ||||| || | ||||||||| Sbjct 320573 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 320632 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 320633 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 320664 Score = 165 bits (182), Expect = 1e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 321372 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321431 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || ||||| ||||| || | || || || || || |||||||| || Sbjct 321432 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 321491 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 ||||| || || ||||||||| |||||||||| || || || ||||| ||| | ||| Sbjct 321492 GGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 321551 Query 172078 CTTCGGGGTGG 172088 | || ||||| Sbjct 321552 TTGCGCGGTGG 321562 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 321072 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321131 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| ||||| ||||| || | || || || || || ||||| || || Sbjct 321132 AAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 321191 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || ||||| || | ||||||||| | || || ||||| || || ||||| || || Sbjct 321192 GGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 321247 Score = 141 bits (156), Expect = 1e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||||||||||||||||||||| ||||| || || ||| |||| |||||||| || || Sbjct 320781 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 320840 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| || || || ||||| ||||| || | || || || || || ||||| || ||| Sbjct 320841 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAT 320900 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || ||||| || | || || ||||| || |||||||| || || ||||| || || Sbjct 320901 GGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCT 320956 >seq19 Length=354189 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 127352 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 127411 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || ||||| || || ||||| || || Sbjct 127412 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 127471 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || || |||| |||||| |||| |||||||| || || ||||| || || Sbjct 127472 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 127527 >seq4 Length=1400164 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 474154 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 474095 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| || || ||||| || | || || || || || |||||||| || Sbjct 474094 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 474035 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || || || ||| || || ||| |||| |||||||| || || ||||| || || | Sbjct 474034 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 473975 Query 172078 CTTCGGGGTGG 172088 || || ||||| Sbjct 473974 CTCCGCGGTGG 473964 >seq3 Length=1448786 Score = 102 bits (112), Expect = 1e-16 Identities = 273/404 (68%), Gaps = 15/404 (4%) Strand=Plus/Plus Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518 |||| || || ||| || ||||| ||| || |||| | || | || || || ||| Sbjct 1181394 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 1181453 Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578 || ||| | ||| | | |||||| || || || || || | ||| |||| | Sbjct 1181454 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 1181513 Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || ||||| || || || || || || || | ||| || ||| | | |||||||| Sbjct 1181514 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 1181573 Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696 || || || ||||| | |||||| | ||||||||||||| || || ||||| | || | Sbjct 1181574 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 1181631 Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755 |||| || ||||| | || || | ||| || || || ||||||||||| || ||| Sbjct 1181632 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 1181690 Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG-AACTAC-TACACCT----GGTAATGATGAG 198809 |||||||| | || | |||| | |||| || | ||| | || || || ||| Sbjct 1181691 ATTGACGCGATCGG--AAAAGC-TCGTGGCAAGGGCGGACAGTTTGGCGGCAACGACGAG 1181747 Query 198810 CGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 || ||| ||| | |||||||| ||| |||||||| ||||| Sbjct 1181748 CGCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 1181791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861676351360