Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 3e-22
seq4 86.0 6e-12
>seq18
Length=397515
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || ||||| || || || || ||||| || || |
Sbjct 320450 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCG 320509
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||| || ||||| || || || ||||||||
Sbjct 320510 TCGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 320569
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || |||||||| || ||||| ||||| |||||| | | | || |||||
Sbjct 320570 CAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTAC 320629
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| ||||| || ||| | ||| |||| | |||||||||
Sbjct 320630 AACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGC 320680
Score = 104 bits (114), Expect = 2e-17
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799
|| || ||||| || || | ||||||| | || | || || ||||| || |||
Sbjct 321372 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321431
Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || || || || ||||| || || || |||||||| || ||||| ||||| |||||
Sbjct 321432 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA- 321490
Query 24860 TCGAGAAACATG--TCA-GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916
|| || || | ||| ||||| |||||||||||||||||||| || ||| | || |||
Sbjct 321491 -CG-GACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTG 321548
Query 24917 CGATTGCGCGGAGG 24930
| |||||||| ||
Sbjct 321549 AGGTTGCGCGGTGG 321562
>seq4
Length=1400164
Score = 86.0 bits (94), Expect = 6e-12
Identities = 109/147 (74%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || || || || || || || || || |||||||| ||||| ||
Sbjct 472944 AAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 472885
Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTA 24904
||||| ||||| | | || | |||| | ||||||||||| ||||| ||||| ||
Sbjct 472884 CAGCTTGAGGACGGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTG 472828
Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| ||||| | || | ||||| |||
Sbjct 472827 CACCTGGTGCTTCGTCTCCGCGGTGGC 472801
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799
|| || ||||| || || | ||||||| | || | || || ||||| || |||
Sbjct 474154 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 474095
Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || || || || || || || || || |||||||| ||||| || ||||| |||||
Sbjct 474094 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 474035
Query 24860 TCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916
| | || | |||| | ||||||||||| ||||| ||||| || ||| ||||| |
Sbjct 474034 GGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 473978
Query 24917 CGATTGCGCGGAGGC 24931
|| | ||||| |||
Sbjct 473977 CGTCTCCGCGGTGGC 473963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897105112640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |