Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18 120 3e-22 seq4 86.0 6e-12 >seq18 Length=397515 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || | Sbjct 320450 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCG 320509 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| || ||||| || || || |||||||| Sbjct 320510 TCGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 320569 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||| || ||||| ||||| |||||| | | | || ||||| Sbjct 320570 CAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTAC 320629 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| | ||| |||| | ||||||||| Sbjct 320630 AACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGC 320680 Score = 104 bits (114), Expect = 2e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || ||||| || ||| Sbjct 321372 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321431 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || ||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 321432 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA- 321490 Query 24860 TCGAGAAACATG--TCA-GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 || || || | ||| ||||| |||||||||||||||||||| || ||| | || ||| Sbjct 321491 -CG-GACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTG 321548 Query 24917 CGATTGCGCGGAGG 24930 | |||||||| || Sbjct 321549 AGGTTGCGCGGTGG 321562 >seq4 Length=1400164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || || |||||||| ||||| || Sbjct 472944 AAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 472885 Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| | | || | |||| | ||||||||||| ||||| ||||| || Sbjct 472884 CAGCTTGAGGACGGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTG 472828 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| ||||| | || | ||||| ||| Sbjct 472827 CACCTGGTGCTTCGTCTCCGCGGTGGC 472801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || ||||| || ||| Sbjct 474154 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 474095 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || || || || || || |||||||| ||||| || ||||| ||||| Sbjct 474094 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 474035 Query 24860 TCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 | | || | |||| | ||||||||||| ||||| ||||| || ||| ||||| | Sbjct 474034 GGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 473978 Query 24917 CGATTGCGCGGAGGC 24931 || | ||||| ||| Sbjct 473977 CGTCTCCGCGGTGGC 473963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897105112640