Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq50 255 6e-63
seq18 143 3e-29
seq4 114 1e-20
seq9 102 8e-17
seq19 96.9 3e-15
seq2 93.3 4e-14
>seq50
Length=15404
Score = 255 bits (282), Expect = 6e-63
Identities = 524/764 (69%), Gaps = 19/764 (2%)
Strand=Plus/Plus
Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991
|||||| ||||||||||| |||||| | || ||| || || ||||| | || |
Sbjct 1121 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 1180
Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048
||| || ||| | ||| ||| | | ||| ||| | ||||||||||| |||
Sbjct 1181 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 1237
Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108
|| ||||| || |||| | ||||||||| |||| ||| ||||| || |
Sbjct 1238 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 1297
Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168
||||| | ||| | ||| |||||| | | || |||| ||| || || |||||
Sbjct 1298 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 1357
Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228
| |||||| || | | | ||||||||| | || || ||| ||| |||
Sbjct 1358 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 1417
Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288
|||| ||| | ||| ||||| |||||||||||||| | ||| | |||| |||||||
Sbjct 1418 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 1477
Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345
||||||| |||||||||||||||| |||| | ||||||| |||| || | |||
Sbjct 1478 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 1537
Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402
|| ||||| | | ||| |||||| || | ||| ||| |||| ||| ||
Sbjct 1538 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 1594
Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCGC 149460
| ||||| | || ||||||||||| ||||| ||| |||||| |||||| |||
Sbjct 1595 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTC-T 1652
Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520
|||||| ||||||||||||||| |||| |||||| || | || ||||||||
Sbjct 1653 TGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 1712
Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580
| | ||||| |||||||||| ||| | || || |||||| ||||| ||
Sbjct 1713 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 1772
Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640
|| ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| |
Sbjct 1773 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 1832
Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||| ||||| ||||| |||||||||||||| ||||| |||
Sbjct 1833 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 1876
Score = 143 bits (158), Expect = 3e-29
Identities = 298/444 (67%), Gaps = 0/444 (0%)
Strand=Plus/Plus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
|||||| |||||| |||||||| || ||||| |||| | || |||| |||
Sbjct 85 CGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTG 144
Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171
| |||||||| |||||||||| | ||||||| | ||| || || ||| || |
Sbjct 145 CGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTT 204
Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231
||| | ||||||| |||||| | ||| || ||| |||| | | ||| | |
Sbjct 205 CTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCG 264
Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291
|||| ||||| || || | | || || || || |||||||||||||| || ||
Sbjct 265 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACG 324
Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351
|| || | |||| ||| |||| || |||| ||||||| ||| | |||||
Sbjct 325 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACT 384
Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411
||||| || || ||||| ||| | ||||||||||| | ||| | | ||
Sbjct 385 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAAT 444
Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471
|| ||||| | ||||||||||| || || ||| || |||||||||| ||||||
Sbjct 445 CTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTA 504
Query 148472 CTGCAGAATGCCGCGGCTAGCGGG 148495
||||| | |||| |||| |||||
Sbjct 505 CTGCAAGAGGCCGTGGCTCGCGGG 528
>seq18
Length=397515
Score = 143 bits (158), Expect = 3e-29
Identities = 154/202 (76%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520
||| ||||| ||||| || |||||||| | | | | |||| ||||||||||||||
Sbjct 320650 GGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 320593
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||||||||||||||||||||| |||||||| ||||| |
Sbjct 320592 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 320533
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | |||||| | | ||| || |||| ||||| ||| |||||||| ||
Sbjct 320532 TTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGG 320473
Query 133641 GTTTTTACGAAAATCTGCATGG 133662
|| || ||||| ||||||||||
Sbjct 320472 GTCTTGACGAAGATCTGCATGG 320451
Score = 109 bits (120), Expect = 5e-19
Identities = 123/163 (75%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 321233 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 321176
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 321175 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCC 321116
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|||| | || | |||||| | | ||| || |||| |||||
Sbjct 321115 TTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 321073
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| |||||| | || | |||||||||||||||||||| || ||||||
Sbjct 320899 TCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 320840
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| |||||| ||||| | |||| |||||| | | ||| || |||| |||||
Sbjct 320839 TCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGACGACTCAACCTCGAGGGTGA 320782
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| || || || || || |||||||| | |||| |||||| |||||||| ||
Sbjct 321533 GGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCC 321474
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 321473 CGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 321414
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||||| | ||| || |||| |||||
Sbjct 321413 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 321373
>seq4
Length=1400164
Score = 114 bits (126), Expect = 1e-20
Identities = 96/116 (83%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 474303 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 474360
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 474361 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 474416
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || || || |||| | |||| | |||||| |||||||||||
Sbjct 473994 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 474053
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||||||||| || || ||||| |||||||| ||||| ||||
Sbjct 474054 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 474113
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
| | || | |||||||| | ||| || |||| |||||
Sbjct 474114 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 474153
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || || || |||| | |||| | |||||| |||||||||||
Sbjct 472832 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 472891
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||||||||| || || ||||| |||||||| |||||| ||||
Sbjct 472892 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 472951
Query 133584 A 133584
|
Sbjct 472952 A 472952
>seq9
Length=941111
Score = 102 bits (112), Expect = 8e-17
Identities = 96/120 (80%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 137364 GTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTT 137305
Query 133565 GTCGGTGATCTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| |||||| ||||| | || || | |||| || || || || |||| ||||
Sbjct 137304 GTCCTGGATCTTGGCCTTGACGATG-TCGATCGTGCTGGAGGACTTGACATCGAGAGTGA 137246
>seq19
Length=354189
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 127513 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 127454
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct 127453 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 127394
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || |||| |||||
Sbjct 127393 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 127353
>seq2
Length=1536035
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 485184 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 485125
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 485124 CGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 485065
Query 133583 GAGCTG 133588
|| |||
Sbjct 485064 GACCTG 485059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420268237120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |