Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq50 255 6e-63 seq18 143 3e-29 seq4 114 1e-20 seq9 102 8e-17 seq19 96.9 3e-15 seq2 93.3 4e-14 >seq50 Length=15404 Score = 255 bits (282), Expect = 6e-63 Identities = 524/764 (69%), Gaps = 19/764 (2%) Strand=Plus/Plus Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 |||||| ||||||||||| |||||| | || ||| || || ||||| | || | Sbjct 1121 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 1180 Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048 ||| || ||| | ||| ||| | | ||| ||| | ||||||||||| ||| Sbjct 1181 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 1237 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || ||||| || |||| | ||||||||| |||| ||| ||||| || | Sbjct 1238 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 1297 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 ||||| | ||| | ||| |||||| | | || |||| ||| || || ||||| Sbjct 1298 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 1357 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | |||||| || | | | ||||||||| | || || ||| ||| ||| Sbjct 1358 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 1417 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 |||| ||| | ||| ||||| |||||||||||||| | ||| | |||| ||||||| Sbjct 1418 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 1477 Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||||||| |||||||||||||||| |||| | ||||||| |||| || | ||| Sbjct 1478 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 1537 Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402 || ||||| | | ||| |||||| || | ||| ||| |||| ||| || Sbjct 1538 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 1594 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCGC 149460 | ||||| | || ||||||||||| ||||| ||| |||||| |||||| ||| Sbjct 1595 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTC-T 1652 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 |||||| ||||||||||||||| |||| |||||| || | || |||||||| Sbjct 1653 TGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 1712 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 | | ||||| |||||||||| ||| | || || |||||| ||||| || Sbjct 1713 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 1772 Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640 || ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| | Sbjct 1773 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 1832 Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 1833 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 1876 Score = 143 bits (158), Expect = 3e-29 Identities = 298/444 (67%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||| |||||||| || ||||| |||| | || |||| ||| Sbjct 85 CGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTG 144 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | |||||||| |||||||||| | ||||||| | ||| || || ||| || | Sbjct 145 CGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTT 204 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||| | ||||||| |||||| | ||| || ||| |||| | | ||| | | Sbjct 205 CTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCG 264 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 |||| ||||| || || | | || || || || |||||||||||||| || || Sbjct 265 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACG 324 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | |||| ||| |||| || |||| ||||||| ||| | ||||| Sbjct 325 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACT 384 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||||| || || ||||| ||| | ||||||||||| | ||| | | || Sbjct 385 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAAT 444 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || ||||| | ||||||||||| || || ||| || |||||||||| |||||| Sbjct 445 CTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTA 504 Query 148472 CTGCAGAATGCCGCGGCTAGCGGG 148495 ||||| | |||| |||| ||||| Sbjct 505 CTGCAAGAGGCCGTGGCTCGCGGG 528 >seq18 Length=397515 Score = 143 bits (158), Expect = 3e-29 Identities = 154/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || |||||||| | | | | |||| |||||||||||||| Sbjct 320650 GGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 320593 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||||||||||||||||||||| |||||||| ||||| | Sbjct 320592 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 320533 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | | ||| || |||| ||||| ||| |||||||| || Sbjct 320532 TTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGG 320473 Query 133641 GTTTTTACGAAAATCTGCATGG 133662 || || ||||| |||||||||| Sbjct 320472 GTCTTGACGAAGATCTGCATGG 320451 Score = 109 bits (120), Expect = 5e-19 Identities = 123/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 321233 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 321176 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||||||||||||||| ||||| |||||||| ||||| | Sbjct 321175 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCC 321116 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 |||| | || | |||||| | | ||| || |||| ||||| Sbjct 321115 TTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 321073 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| |||||| | || | |||||||||||||||||||| || |||||| Sbjct 320899 TCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 320840 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || |||||| ||||| | |||| |||||| | | ||| || |||| ||||| Sbjct 320839 TCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGACGACTCAACCTCGAGGGTGA 320782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || || || || |||||||| | |||| |||||| |||||||| || Sbjct 321533 GGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCC 321474 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 321473 CGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 321414 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||||| | ||| || |||| ||||| Sbjct 321413 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 321373 >seq4 Length=1400164 Score = 114 bits (126), Expect = 1e-20 Identities = 96/116 (83%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 474303 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 474360 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 474361 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 474416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 473994 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 474053 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| ||||| |||| Sbjct 474054 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 474113 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | | || | |||||||| | ||| || |||| ||||| Sbjct 474114 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 474153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 472832 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 472891 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 472892 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 472951 Query 133584 A 133584 | Sbjct 472952 A 472952 >seq9 Length=941111 Score = 102 bits (112), Expect = 8e-17 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 137364 GTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTT 137305 Query 133565 GTCGGTGATCTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| |||||| ||||| | || || | |||| || || || || |||| |||| Sbjct 137304 GTCCTGGATCTTGGCCTTGACGATG-TCGATCGTGCTGGAGGACTTGACATCGAGAGTGA 137246 >seq19 Length=354189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 127513 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 127454 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 127453 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 127394 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 127393 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 127353 >seq2 Length=1536035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 485184 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 485125 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 485124 CGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 485065 Query 133583 GAGCTG 133588 || ||| Sbjct 485064 GACCTG 485059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420268237120