Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq50 246 4e-59 seq4 136 6e-26 seq21 123 4e-22 seq7 89.7 7e-12 >seq50 Length=15404 Score = 246 bits (272), Expect = 4e-59 Identities = 288/391 (74%), Gaps = 15/391 (4%) Strand=Plus/Minus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 |||||| || ||| | ||||||||||||||||| | ||| | || || Sbjct 1867 CGAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGG---------CGA 1817 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCAC 259914 ||||| || ||| || | ||| || ||| | ||||||| ||| || || || Sbjct 1816 CGACATTG------AGCGCGCGATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTAC 1763 Query 259915 CTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 || |||| |||||||| || ||||||||||||| ||||||| ||||||||||| Sbjct 1762 GCACGCCTCGCCGACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTT 1703 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | ||||||| ||| ||||||||||||||||| |||||||||||| |||||| Sbjct 1702 CCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGC 1643 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 ||||||||||||| ||||||||||||||||| | | ||||| | ||||| | || Sbjct 1642 GCTCATCTCCAAGACGGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGG 1583 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 | | ||| | || ||||| |||||| | || |||||| | | |||||||| ||||| | Sbjct 1582 CTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTA 1523 Query 260155 TAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||| |||| |||||||||||||||||| || Sbjct 1522 CAACAACACCGCGCGCTACGTCGACCAGGGC 1492 Score = 125 bits (138), Expect = 1e-22 Identities = 256/383 (67%), Gaps = 16/383 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||| ||||||| |||||| || ||| |||||| || ||||||||||||||| || Sbjct 1494 GGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 1435 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||||| ||| |||| || |||||||| Sbjct 1434 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 1381 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 || | || | | ||| |||| |||||| || || | || || || | | | Sbjct 1380 GACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 1323 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||||||| | ||||| ||||| ||||||| |||||||| ||||| ||| |||| | Sbjct 1322 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 1263 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTGC 262082 || | | || | ||| | ||| || | | | Sbjct 1262 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCAC---CATTC 1206 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 |||| | || |||||| ||||| ||| |||||| ||||||| |||| |||| || Sbjct 1205 CCGCCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 1146 Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165 || ||||||||||||||| |||| Sbjct 1145 TGCTCTACAAGGACGCCGCCAAC 1123 Score = 86.0 bits (94), Expect = 9e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||| || || || | | || ||||| ||| | ||||||||| | || Sbjct 471 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTC 412 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 |||| ||||| || || |||| |||||||| ||| || ||||||||||||| Sbjct 411 TGCGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAG 352 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||| |||||||||||| ||||| || ||| | ||||| || || |||||| Sbjct 351 CCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAAC 292 Query 263059 CGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA 263098 | | || || ||| | | || | ||||||||||||| Sbjct 291 CCCTGGCTCCTC-CGCGACCTCGTCGACCGCGGCCTGTGGA 252 >seq4 Length=1400164 Score = 136 bits (150), Expect = 6e-26 Identities = 159/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| |||||| |||||||||||| | ||||| ||| |||| ||||||| || | Sbjct 525778 ATCATTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAG 525837 Query 1456583 CTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 || |||||||||||| || || ||||||||||||||||| | | || || || ||||| Sbjct 525838 CTTATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG-AGTTCGTGGCAGACCGA 525894 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 |||| || |||||| | |||||| ||||| | || ||||||||| | || Sbjct 525895 TTGCTTATCGCACTCGGCAAC-GAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTAT 525953 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 ||| |||||||| | |||||||||||||| Sbjct 525954 GGACATGATCTCGATGGAGGGCAAGACCAA 525983 Score = 132 bits (146), Expect = 7e-25 Identities = 178/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926 ||| || | |||| ||| ||||| || ||||| | || |||||| | | | |||| | Sbjct 691746 CGCGCATACCGCAAGATCGCACACCGACTCTGAATGGGCTCGATAATCTTGTTCGACTGG 691687 Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 ||||| |||| |||||||| ||||||||| | | ||||| || |||||||| Sbjct 691686 TTGCACGCCAACGCAAACCGAGTCGTATTGCTGTAAAGCTCCATCGTGCGGCGGAGGGCT 691627 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 ||||| || ||| ||| | |||||||||||||||||||||||| ||||||||| ||| Sbjct 691626 TGTTGTGCACCCGTCGTCATCGAGTCGGCCTCGTCGAGGATGATGAGCTTGTGGCGGCCG 691567 Query 333047 TGCGGC-AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCAC 333105 | ||| || || ||| | ||| ||| |||||| ||||| |||||||| | Sbjct 691566 AGAGGCAAGGTC-ACCTTCTTCTGCGCGAACGTCTTGATGCGGTTGCGGACGACGTCGAT 691508 Query 333106 GCCGC 333110 ||||| Sbjct 691507 GCCGC 691503 Score = 129 bits (142), Expect = 8e-24 Identities = 248/359 (69%), Gaps = 15/359 (4%) Strand=Plus/Plus Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190 ||||||||| ||||||||||| || ||| || | | || ||||||||||||||| Sbjct 60259 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAGTCCTCCTGGTT 60318 Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247 |||| | || || || |||||| ||| || ||||| || |||| || || || Sbjct 60319 GTAGCCAGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 60377 Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304 | || || |||||| | | ||| | | || ||| ||||||||| | ||| Sbjct 60378 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 60435 Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361 || | || ||||| ||| | |||| | | |||| | ||| | | | || ||| Sbjct 60436 GTTGGCCATTGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACGCC--CATAGC-CTG 60492 Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421 |||||||||||| | ||||||| |||| ||||| | ||||||||||| || || ||||| Sbjct 60493 CTTGCCCATGGCAGACTGGTAGGTGTTTCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 60552 Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480 ||| || |||||| ||| || || | ||||||| |||| |||||| ||| || Sbjct 60553 GATCGAGGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 60611 Score = 111 bits (122), Expect = 2e-18 Identities = 335/501 (67%), Gaps = 31/501 (6%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||||||||| | || |||||||| | ||| || |||||||| ||||| ||| Sbjct 59416 CTCCATCTCTCCGAAACGCAAGCCGCCGTCCCTCGAACGACCCTCGACGGGCTGACGGGT 59475 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 | ||||| || |||||||| | || || || ||||||||| | ||| ||| || Sbjct 59476 CAAGATCTGCACAGGGCCGCGCGCGCGAGCATGGATCTTGTCGCCGACCATGTGCTTGAG 59535 Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTAA-AGATCAACGCCTCCATGGGCTCGC---CGGTGT 1600433 | |||||||||| ||| |||| ||| ||||| | ||| || | |||| Sbjct 59536 GCGCTGGTAGTAGGTCGG-GCCGAGGTAGACTTGCGCCTGGA---GCTTGCGTCCAGTGT 59591 Query 1600434 GCGGGTGGTAGAGCACCTCCTTGCCGTAGCGC-TCGCATCCGTG---GCGAGCCAACTCG 1600489 | || ||| | ||||| |||| ||| | | | |||| ||| || || Sbjct 59592 GGCCGTTGTACATGACCTCGAGGCCGC-GCGAGTGGTAGCCGTACTTGCGGAGCAGTTC- 59649 Query 1600490 GCGGCGACATCG--TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCT 1600547 ||| || | ||||| ||||| || |||||||| ||||||| | | ||| Sbjct 59650 ----CGAGATGGCCTCGACCGTGACCTCGGAGAAGGGCGTCGCGTCGCCTTCGTTGCCGG 59705 Query 1600548 CG--CGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGA 1600605 | || | | |||||| ||| || ||| | || | ||| |||||||||||||| Sbjct 59706 TGATCGTCGAG--ACCTTGGACAGCAGACACTCGACCAAATGGCCGATGGTCATGCGCGA 59763 Query 1600606 CGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGG 1600665 ||||||||||| |||||||| | | |||||||||| | | || | | ||| | || Sbjct 59764 GGGGATGGCGTGAGGGTTGATGATCAGGTCGGGCGTG--ATCCCCTC-TGCCGAGAACGG 59820 Query 1600666 CATGTCCTCGGTGGAGCGCACG--CTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGAC 1600723 ||||||||| |||| | | | | |||| | || ||||| || |||||||| || | Sbjct 59821 CATGTCCTC-GTGGCG-GTAGGTAATGCCGATCGTACCCTTCTGACCGTGGCGAGAGGCG 59878 Query 1600724 AGTTTGTCGCCCACCTCGGGC 1600744 | ||||| || | ||||||| Sbjct 59879 AACTTGTCACCGATCTCGGGC 59899 Score = 111 bits (122), Expect = 2e-18 Identities = 121/156 (78%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| |||||||| |||||| | | |||||| | ||| || || | || | |||| Sbjct 525418 GAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC--TTCGGCGAG 525475 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct 525476 CGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 525534 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||| | |||||||| || Sbjct 525535 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 525570 >seq21 Length=262679 Score = 123 bits (136), Expect = 4e-22 Identities = 157/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 ||||| |||| ||| ||||||||||||||| |||| || | | || | |||| || Sbjct 18192 CAGATTATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTC 18133 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 | | |||||||||||||||||| |||||| | |||||||| | | || ||||| |||| Sbjct 18132 GGCTTGATCGGCATGAACGCCACC-CTCATGCGACAGTACATCG-AGTTCGTCGCGGACC 18075 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | |||| | |||||||| | || |||| ||| | | ||||||||| | Sbjct 18074 GATTGCTTGTCGCGCTCGGGAAC-GACAAGCTGTACAATGCCGAGAACCCGTTCGACTTT 18016 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 |||||| |||||||| | |||||||||||||| Sbjct 18015 ATGGAGATGATCTCGATGGAGGGCAAGACCAA 17984 Score = 87.8 bits (96), Expect = 3e-11 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| || || || |||| || ||||| |||||||||||||| ||||| ||| || Sbjct 18461 CTTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTT 18402 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 | | | ||||| |||||||||||||| ||| | ||||||||| Sbjct 18401 CGCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGT 18359 >seq7 Length=1041051 Score = 89.7 bits (98), Expect = 7e-12 Identities = 189/281 (67%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| |||||||||||||||||||| | | | || | || ||| | ||| Sbjct 819010 CCCATGACCGGCTTGTTGGCCTGCGGCGAGATGATGTTTCGCGCGACGGCGGCGATGTTG 818951 Query 1817557 GTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| ||| | || | ||| | ||||| || || || | ||||||||||||||| || Sbjct 818950 ATCAACTCCGACCGAGTCTCTTCCGACTGCGGGACGTGCAAGTTCATCTCGTCGCCATCG 818891 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 || ||||| ||||||| ||||||| ||||||| || | ||| | |||||| Sbjct 818890 AAATCGGCGTTGTAGGGCGAGGTGACGGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 818831 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || ||| | ||| || | |||| | || ||||||||||| | | Sbjct 818830 AGCTTGACGCGGTGAGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAAGAGG 818771 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||| ||||||| | ||||| |||||||| |||| || Sbjct 818770 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACGATCCAGCC 818730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177802712238256