Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq18 109 5e-19
seq4 95.1 1e-14
seq19 84.2 2e-11
seq2 82.4 7e-11
>seq18
Length=397515
Score = 109 bits (120), Expect = 5e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565
||||||||| || |||||||| || | || | || ||||||||||||||||||||
Sbjct 321566 ATTTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC 321507
Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625
| || || |||| || |||||||| ||||| || ||||| ||||||||||| |
Sbjct 321506 TTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 321447
Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684
|| | || |||||||||| ||||| ||| | |||| | | ||||||| ||| |
Sbjct 321446 CGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACT 321388
Query 35685 CCACCTCCACCGTGATC 35701
| ||||| | ||||||
Sbjct 321387 CGACCTCGAGGGTGATC 321371
Score = 105 bits (116), Expect = 6e-18
Identities = 144/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| | | || || | || || |||||||| ||||| ||
Sbjct 320644 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 320585
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||| | || |||||||||| ||||| ||| | | |
Sbjct 320584 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 320525
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||| || ||||| | ||||| || || || || | || || ||
Sbjct 320524 GTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 320465
Query 35725 AAATATCTGCAT--TCTGTG 35742
|| |||||||| ||||||
Sbjct 320464 GAAGATCTGCATGGTCTGTG 320445
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||||||||| | | || || |||| || |||||||| ||||| ||
Sbjct 321227 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 321168
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||||| || |||||||||| ||||| ||| | ||
Sbjct 321167 GATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 321109
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| | | |||||| ||| || ||||| | ||||||
Sbjct 321108 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 321071
>seq4
Length=1400164
Score = 95.1 bits (104), Expect = 1e-14
Identities = 128/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| |||||||| || ||| | || ||| |||| ||
Sbjct 473981 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 474040
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| || || || ||||| ||||||||||| | |||| || ||||||||||
Sbjct 474041 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 474100
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||||| ||| | |||| | | ||||||| ||| || ||||| | ||||||
Sbjct 474101 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 474155
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| |||||||| || ||| | || ||| |||| ||
Sbjct 472819 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 472878
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| || || || ||||| ||||||||||| | |||| || ||||||||||
Sbjct 472879 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 472938
Query 35647 GATCTT 35652
||||||
Sbjct 472939 GATCTT 472944
>seq19
Length=354189
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| || | | || || |||| || |||||||| || |||||
Sbjct 127507 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 127448
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 127447 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 127389
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
|| | | |||||| ||| || ||||| | ||||||
Sbjct 127388 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 127351
>seq2
Length=1536035
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || |||| || |||||||| ||||| ||
Sbjct 485178 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 485119
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
||||| ||||||||||| | || | || |||||||||| ||||||
Sbjct 485118 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 485071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793104127040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |