Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18 122 9e-23 seq4 120 3e-22 seq7 105 7e-18 seq19 100 3e-16 seq2 86.0 6e-12 >seq18 Length=397515 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 ||| |||||||| || || |||||||||||||||||||| || || ||| | ||| Sbjct 321548 CAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTC 321489 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || ||||| || || || || ||||| |||||||| |||||||| ||||| || || || Sbjct 321488 CTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 321429 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || ||||| ||| | ||||||||||| || || ||||| || || Sbjct 321428 CTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 321372 >seq4 Length=1400164 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 473964 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 474023 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 474024 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 474083 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | ||||||||||| || || Sbjct 474084 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 474143 Query 134667 TCGAGAGTAAT 134677 ||||| || || Sbjct 474144 TCGAGGGTGAT 474154 >seq7 Length=1041051 Score = 105 bits (116), Expect = 7e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 134507 GAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAG 134566 |||||| ||||| || || || | |||||||||||||| || | | || || ||||| Sbjct 755342 GAGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAG 755283 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 || || ||||| || ||||| |||||||| |||||||| ||||| || || || || | Sbjct 755282 TTGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGT 755223 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || ||||| ||| | |||||| ||||| || || ||||| || || Sbjct 755222 CTTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 755172 >seq19 Length=354189 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| |||||||||||||| || ||| | ||| ||| Sbjct 127524 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 127465 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| || || || ||||| || || || || Sbjct 127464 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 127405 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || ||||| || || Sbjct 127404 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 127352 >seq2 Length=1536035 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| | ||| | ||| ||| Sbjct 485195 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCG 485136 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || Sbjct 485135 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 485076 Query 134625 ATTTT 134629 || || Sbjct 485075 ATCTT 485071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397844061760