Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq50 149 8e-31
>seq50
Length=15404
Score = 149 bits (164), Expect = 8e-31
Identities = 489/750 (65%), Gaps = 25/750 (3%)
Strand=Plus/Plus
Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407
||||| || ||||||||||||||| |||| | |||||||| ||| | | ||| |
Sbjct 1122 TGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGA 1181
Query 111408 TAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCG 111463
| || | ||| | | || | ||| || ||||| | ||||| || |||||| |||
Sbjct 1182 TGGCGTACCAGAGCTTCTG-GGCGGG---AATGGTGCGCTTGGCGCGACCCTCCTTCTCA 1237
Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523
||||| | | || | | ||||| || || | ||| ||| || ||||||| |
Sbjct 1238 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 1297
Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583
| || ||||| || | ||| | || | ||| || |||| |||||| ||||| |||
Sbjct 1298 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 1357
Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643
||||| |||| | || | || | || |||| || | || ||||| ||
Sbjct 1358 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 1417
Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703
| || |||||||| | ||| || |||||||| ||||| || |||| |||| | |||
Sbjct 1418 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 1477
Query 111704 -------TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756
| | | ||||| || | || |||||||| ||| ||| | ||||| ||
Sbjct 1478 GGGCGCTTGTTGCCGCCC----TGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAG 1533
Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCT 111814
||| || || || || | || | || || || || ||| |||||| | ||
Sbjct 1534 CATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAG--CCGGTCGCG 1591
Query 111815 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874
| | | ||||| | || || || || ||| ||| ||||| |||| ||| |
Sbjct 1592 CGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTC 1651
Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934
| || || | ||||| || | ||| ||||| ||||| | | || ||||||||
Sbjct 1652 TTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGAC 1711
Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994
|| | |||||| || || || || |||||||| || || | ||||| | || ||
Sbjct 1712 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTA 1770
Query 111995 CC-TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053
|| | ||||| || ||| ||||| | | |||||||| || |||||||||||
Sbjct 1771 CCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCC 1830
Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083
|| ||||| ||||||| ||||| ||| ||
Sbjct 1831 GACCGCGACACGCATGAGCATGTGCTGCGG 1860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031309164800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |