Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq50 149 8e-31 >seq50 Length=15404 Score = 149 bits (164), Expect = 8e-31 Identities = 489/750 (65%), Gaps = 25/750 (3%) Strand=Plus/Plus Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407 ||||| || ||||||||||||||| |||| | |||||||| ||| | | ||| | Sbjct 1122 TGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGA 1181 Query 111408 TAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCG 111463 | || | ||| | | || | ||| || ||||| | ||||| || |||||| ||| Sbjct 1182 TGGCGTACCAGAGCTTCTG-GGCGGG---AATGGTGCGCTTGGCGCGACCCTCCTTCTCA 1237 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 ||||| | | || | | ||||| || || | ||| ||| || ||||||| | Sbjct 1238 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 1297 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || ||||| || | ||| | || | ||| || |||| |||||| ||||| ||| Sbjct 1298 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 1357 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||| |||| | || | || | || |||| || | || ||||| || Sbjct 1358 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 1417 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || |||||||| | ||| || |||||||| ||||| || |||| |||| | ||| Sbjct 1418 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 1477 Query 111704 -------TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 | | | ||||| || | || |||||||| ||| ||| | ||||| || Sbjct 1478 GGGCGCTTGTTGCCGCCC----TGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAG 1533 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCT 111814 ||| || || || || | || | || || || || ||| |||||| | || Sbjct 1534 CATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAG--CCGGTCGCG 1591 Query 111815 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874 | | | ||||| | || || || || ||| ||| ||||| |||| ||| | Sbjct 1592 CGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTC 1651 Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934 | || || | ||||| || | ||| ||||| ||||| | | || |||||||| Sbjct 1652 TTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGAC 1711 Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994 || | |||||| || || || || |||||||| || || | ||||| | || || Sbjct 1712 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTA 1770 Query 111995 CC-TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 || | ||||| || ||| ||||| | | |||||||| || ||||||||||| Sbjct 1771 CCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCC 1830 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||| ||||||| ||||| ||| || Sbjct 1831 GACCGCGACACGCATGAGCATGTGCTGCGG 1860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031309164800