Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq50 176 6e-39
seq12 96.9 4e-15
>seq50
Length=15404
Score = 176 bits (194), Expect = 6e-39
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Plus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
|| |||||||| |||||| | || | |||||||| |||| || ||| || || | |
Sbjct 1130 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 1189
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || || | ||| ||||| || ||||| | ||| ||||| | |
Sbjct 1190 CAGAGCTTCTGG-GCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 1248
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
|| | | ||||| || || | |||| ||| || ||||||| | ||||||||
Sbjct 1249 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 1308
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| || |||||||| ||
Sbjct 1309 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 1368
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 1369 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 1428
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 1429 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 1488
Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
|| |||||| || || | ||| ||| ||| | || || ||||| || ||||| ||
Sbjct 1489 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 1548
Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303
| || | ||| || || || ||| |||||| | | || | || | ||||||
Sbjct 1549 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 1606
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| ||| || || || ||| ||| ||||| |||||||| | |||| || |||||
Sbjct 1607 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 1666
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 1667 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 1726
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482
|| || || ||||||||||| || || | ||||| | || |||| | |||||
Sbjct 1727 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 1785
Query 119483 GTCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539
|| ||| ||||| || ||| | |||||| || ||||| || |||| || ||| ||
Sbjct 1786 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 1842
Query 119540 CATAAACATGTATTGGGGT 119558
||| | ||||| || |||
Sbjct 1843 CATGAGCATGTGCTGCGGT 1861
>seq12
Length=734256
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| |||| || | ||||||||||| || |||||||| || | |||||||
Sbjct 158044 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158103
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 158104 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158163
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | |||||||| |||
Sbjct 158164 GTCCGCGAGTTCGTCGAG 158181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434519721280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |