Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq50 138 1e-27 seq32 109 6e-19 >seq50 Length=15404 Score = 138 bits (152), Expect = 1e-27 Identities = 482/741 (65%), Gaps = 21/741 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || |||||||| | Sbjct 1860 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 1801 Query 104282 TTGGAGACATACGACAAGATGTCCCAA-GGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| | |||| || | ||||| | || || ||||| Sbjct 1800 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTT-ACGCACGCCTCGCCGACGCTCTT 1742 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || |||||||| || | | ||||| || Sbjct 1741 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 1682 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | ||| |||| ||||| ||| ||| || Sbjct 1681 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGG 1622 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 || || || | ||||| | | | || | |||||| ||| || || Sbjct 1621 CGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGG--CTCGTACATCGCCGGCACG 1564 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || || || || ||||| ||||| | ||| ||| |||||||| Sbjct 1563 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTAC 1504 Query 104579 GTAAATCAAGCTGGGCGTCGAAA-------GGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || ||||| | | | ||| | |||| |||| || ||||| || Sbjct 1503 GTCGACCA----GGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTG 1448 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || ||| | |||||||| || | || ||||| || | ||||||| || Sbjct 1447 GCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 1388 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||||| | |||| || ||||||||||| || ||||||||| || | || ||| | Sbjct 1387 CGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCA 1328 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| | ||||| || || | | ||||||| || ||| ||| | | || Sbjct 1327 GAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGG 1268 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGG 104870 || ||||| | | || | | ||||| ||| | || ||||| || | ||| || Sbjct 1267 CGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCA-AGCGCACCA 1209 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || | || | | ||| | || || ||| || | || |||||| || | || Sbjct 1208 TTCCCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCC 1150 Query 104930 TACATGCTTTACAAAGACGCC 104950 | |||||| ||||| |||||| Sbjct 1149 TTCATGCTCTACAAGGACGCC 1129 >seq32 Length=59280 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| || || || |||||||||||||||| || ||||| ||||||| |||||||| ||| Sbjct 23911 CTTTCCGCGGAGCGGGAAGACACCGTAGTTGTCGCGACCGACGACGGCGAGACCCGAGAC 23970 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT 169455 ||||| | ||| |||||||| |||||||| | ||||||||| || || Sbjct 23971 GGCGAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCACTT 24018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260158413120