Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq50 444 6e-120 seq5 89.7 6e-13 >seq50 Length=15404 Score = 444 bits (492), Expect = 6e-120 Identities = 540/733 (74%), Gaps = 2/733 (0%) Strand=Plus/Plus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || ||| | | ||| Sbjct 1129 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTA 1188 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| | | |||| ||||||| | ||| || | | Sbjct 1189 CCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 1248 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 || ||| ||||| | || || ||||| ||| | ||||| || |||| ||||| | Sbjct 1249 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 1308 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| || ||||| ||||| Sbjct 1309 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 1368 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 1369 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 1428 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 1429 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 1488 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||||||||||| |||||| || || ||||||||| | || ||||||||||| | |||||| Sbjct 1489 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 1548 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | ||| |||| || ||||| | | | | Sbjct 1549 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATCG 1607 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | |||||||||| |||||||| ||||||||| ||||||| Sbjct 1608 AGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 1667 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 1668 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 1727 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| |||||||| ||| || | ||| || | Sbjct 1728 GCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGT 1787 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||||||| | ||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 1788 TGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGA 1847 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 1848 GCATGTGCTGCGG 1860 Score = 387 bits (428), Expect = 2e-102 Identities = 533/740 (72%), Gaps = 4/740 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||| | Sbjct 1860 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 1801 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| |||| ||| || || ||| |||||||| ||||||| || ||| Sbjct 1800 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTC 1741 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||||| | ||| || ||||| || | |||||||| ||| Sbjct 1740 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGAC 1681 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| ||||||||| |||||||| |||||||||| | |||| Sbjct 1680 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGC 1621 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | || ||||| ||| || | ||| || ||||| Sbjct 1620 GGCATCGGTCTCTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 1562 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||| |||| ||||||||||| | ||||||||| || | |||| Sbjct 1561 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACG 1503 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||||| Sbjct 1502 TCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 1443 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| || | || |||||||| || ||| |||||| || | |||||| | ||| | Sbjct 1442 CCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGC 1383 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 ||||| | ||| ||| | |||||||| ||||| ||||||||| || ||| || ||| Sbjct 1382 GCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 1323 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| ||| || ||||| | ||| ||||||||||| | Sbjct 1322 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 1263 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 |||||| ||| ||| | || || | |||| || |||| | | | Sbjct 1262 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCG 1203 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 ||| | | ||||| || | ||||| | |||||||||||| |||| || | |||| Sbjct 1202 CCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGC 1143 Query 19821 GCTACAAGGACGCCGCGAAC 19840 ||||||||||||||| ||| Sbjct 1142 TCTACAAGGACGCCGCCAAC 1123 Score = 178 bits (196), Expect = 1e-39 Identities = 542/833 (65%), Gaps = 56/833 (7%) Strand=Plus/Plus Query 78207 GCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACT 78266 |||||||||||||||||||||||| ||||| | |||||| || |||| |||| | Sbjct 1 GCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGT 60 Query 78267 CGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGC 78326 ||| | | | || |||||||||||| |||||||||||| |||| ||||||||||| Sbjct 61 CGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGC 120 Query 78327 CGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAG 78386 | | ||||||||| ||| |||| |||||||| | ||| ||| ||| ||| || Sbjct 121 GGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAG 180 Query 78387 CTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCG--GCTCGC-ACAATTTCATTCTT 78443 ||| || |||| | | | | | || ||| | ||| | || ||||| Sbjct 181 CTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTT 240 Query 78444 AATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGCC---GGTTAAT 78500 || |||||| | | | || || ||| ||| ||| |||| | Sbjct 241 CATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG---AGGAGCCAGGGGTTGAC 297 Query 78501 CATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAA 78560 | |||||||||||| ||| ||||| ||||||||||| ||||||||||||||| Sbjct 298 GACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAA 357 Query 78561 AGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620 ||||||||| || | |||||| |||||| ||||||||||| || ||| | || Sbjct 358 CGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAG 417 Query 78621 AGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT----TAGGCC--GTCCCAAAATTC 78674 || || || | || ||| | |||| |||| | |||| |||||| | || Sbjct 418 CGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTC 477 Query 78675 ATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGA------ 78728 ||| || || ||||| ||| || | || || | | ||| ||||| Sbjct 478 CGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCC 537 Query 78729 ---CCCCTTGAACGTCTCGTAAGATCCCTCCTC------CTTGGCGA----GT--TCGC- 78772 | ||||| ||| ||| | || ||| | ||||| || |||| Sbjct 538 GTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGCGATGGCGTAGTCGCG 597 Query 78773 --------------ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 | ||||||| | || |||||||| | | ||||||||| Sbjct 598 GGCCATGTCGCACGACGACTCGATC---GCGGCGTGGTAGATCGTCTCGAAGATCTGGAC 654 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 |||||| | |||||||| || | |||||||| || | ||| ||||||| | ||||| Sbjct 655 GTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCATGAAGGCGTCGGC 714 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCCT 78937 || ||||| || |||||| ||||||| |||||||| | |||||| | || |||| ||| Sbjct 715 GAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTC-GGCCTCCT 773 Query 78938 CGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 | ||||| |||| ||||||| |||||||| ||| |||||||||| Sbjct 774 TGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGACGACC 826 Score = 170 bits (188), Expect = 2e-37 Identities = 541/836 (65%), Gaps = 62/836 (7%) Strand=Plus/Minus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 |||||||||| || |||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 826 GGTCGTCACGTACAACTTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 767 Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||| || | |||||||| ||||||| ||||| || ||||| || ||||| Sbjct 766 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 710 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 || |||||| ||| | || | |||||| ||| |||||||| | |||||| Sbjct 709 CGCCTTCATGGCCCTCCGTCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTCCA 650 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA--------------A 20236 ||||||||| | | |||||||| || || | |||||||| | Sbjct 649 GATCTTCGAGACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCCCGCGACTA 590 Query 20237 C----TCGCCAAA------GAGGACGGCCCGTACGAGACGTTCAAGGGG---------TC 20277 | ||||| | ||| |||| |||| ||| ||||| | || Sbjct 589 CGCCATCGCCCACCCCGGCGAGCCCGGCTGGTACCCCTCGTACAAGGAGAACGGCGGCTC 530 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337 ||||||| | | || || | ||| ||| ||||| |||||| || || | || Sbjct 529 GCCCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCGACGGACCTGTG 470 Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391 | | ||| | |||| |||| | ||||| | ||||||||| | || Sbjct 469 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTCTG 410 Query 20392 CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCC 20451 |||||| ||||||||||| |||||| |||||| | || ||||||||| |||||||| Sbjct 409 CGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCC 350 Query 20452 GTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAA 20511 ||||||| ||||||||||| || ||| || ||||| |||||| | || ||| Sbjct 349 GTACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAACC- 291 Query 20512 GCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATG 20567 ||||| |||||||| | | || ||||| | || ||||| Sbjct 290 ---CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACA 234 Query 20568 AAATTGTC-CGAGC--CGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACCTCA 20621 || || || | |||| || ||||| | | |||||| | | |||| Sbjct 233 CGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGTATCCCTGATGAGCTCA 177 Query 20622 AGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCG 20681 || ||| |||| ||| || ||||| ||| | |||||| | |||||||| | | |||| Sbjct 176 AGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCG 117 Query 20682 ATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCC 20741 | ||||| || | |||||||||||| ||||||||||| ||| | | | |||| | Sbjct 116 ACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCA 57 Query 20742 TGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGC 20797 ||||| |||| | || ||||| | ||||||||| | ||||| |||||||||||| Sbjct 56 TGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGC 1 >seq5 Length=1355845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20703 AGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGC 20762 |||| ||||||||||| ||| | | | |||| | ||||| |||| | || |||| Sbjct 125978 AGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGC 125919 Query 20763 ATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCC 20821 | | ||||||||| | ||||| |||||||||||||||||||| || || ||||| ||| Sbjct 125918 ACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 125860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || || | |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 125860 GGCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTG 125919 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACT 78301 ||| || |||| |||| |||| | | | || |||||||||||| |||| Sbjct 125920 CATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACT 125978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524196622720