Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq50 444 6e-120
seq5 89.7 6e-13
>seq50
Length=15404
Score = 444 bits (492), Expect = 6e-120
Identities = 540/733 (74%), Gaps = 2/733 (0%)
Strand=Plus/Plus
Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229
||||||||||||| |||| | || | || ||||| ||||| || ||| | | |||
Sbjct 1129 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTA 1188
Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289
||||| | | |||| | | |||| ||||||| | ||| || | |
Sbjct 1189 CCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 1248
Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349
|| ||| ||||| | || || ||||| ||| | ||||| || |||| ||||| |
Sbjct 1249 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 1308
Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409
||| ||||||| ||| || ||| || ||||||||||||||| || ||||| |||||
Sbjct 1309 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 1368
Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469
||| | |||||| || | |||||| | ||| |||||| || || ||||| ||
Sbjct 1369 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 1428
Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529
|| | ||||||||||||||||||||| || ||||||||||||| ||| |||||||
Sbjct 1429 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 1488
Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589
||||||||||| |||||| || || ||||||||| | || ||||||||||| | ||||||
Sbjct 1489 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 1548
Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649
|| | | ||||||||| ||| ||| | ||| |||| || ||||| | | | |
Sbjct 1549 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATCG 1607
Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708
|| |||||||| |||| | |||||||||| |||||||| ||||||||| |||||||
Sbjct 1608 AGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 1667
Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768
||||||||||||||||||||||||| | ||| |||||||| ||| | ||| ||||
Sbjct 1668 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 1727
Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828
||| |||||||||||||| ||||||| |||||||| ||| || | ||| || |
Sbjct 1728 GCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGT 1787
Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888
||||||||| | ||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1788 TGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGA 1847
Query 79889 AGAGGTACTGGGG 79901
| || ||| ||
Sbjct 1848 GCATGTGCTGCGG 1860
Score = 387 bits (428), Expect = 2e-102
Identities = 533/740 (72%), Gaps = 4/740 (1%)
Strand=Plus/Minus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|| ||| || | ||||||| ||||||||||||||||| ||||||||| | ||| |
Sbjct 1860 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 1801
Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222
|||||| ||| |||| ||| || || ||| |||||||| ||||||| || |||
Sbjct 1800 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTC 1741
Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282
|||||||| ||| |||||||| | ||| || ||||| || | |||||||| |||
Sbjct 1740 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGAC 1681
Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342
|| |||||||||||||| ||||||||| |||||||| |||||||||| | ||||
Sbjct 1680 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGC 1621
Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401
|| ||||| || | | | | || ||||| ||| || | ||| || |||||
Sbjct 1620 GGCATCGGTCTCTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 1562
Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460
||| || ||| ||| ||| |||| ||||||||||| | ||||||||| || | ||||
Sbjct 1561 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACG 1503
Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520
|| ||||||| ||| ||| ||| |||| |||||||||||||||||||||| |||||||
Sbjct 1502 TCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 1443
Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580
| ||| || | || |||||||| || ||| |||||| || | |||||| | ||| |
Sbjct 1442 CCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGC 1383
Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640
||||| | ||| ||| | |||||||| ||||| ||||||||| || ||| || |||
Sbjct 1382 GCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 1323
Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700
|| |||| ||| | ||||| ||| || ||||| | ||| ||||||||||| |
Sbjct 1322 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 1263
Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760
|||||| ||| ||| | || || | |||| || |||| | | |
Sbjct 1262 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCG 1203
Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820
||| | | ||||| || | ||||| | |||||||||||| |||| || | ||||
Sbjct 1202 CCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGC 1143
Query 19821 GCTACAAGGACGCCGCGAAC 19840
||||||||||||||| |||
Sbjct 1142 TCTACAAGGACGCCGCCAAC 1123
Score = 178 bits (196), Expect = 1e-39
Identities = 542/833 (65%), Gaps = 56/833 (7%)
Strand=Plus/Plus
Query 78207 GCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACT 78266
|||||||||||||||||||||||| ||||| | |||||| || |||| |||| |
Sbjct 1 GCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGT 60
Query 78267 CGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGC 78326
||| | | | || |||||||||||| |||||||||||| |||| |||||||||||
Sbjct 61 CGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGC 120
Query 78327 CGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAG 78386
| | ||||||||| ||| |||| |||||||| | ||| ||| ||| ||| ||
Sbjct 121 GGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAG 180
Query 78387 CTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCG--GCTCGC-ACAATTTCATTCTT 78443
||| || |||| | | | | | || ||| | ||| | || |||||
Sbjct 181 CTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTT 240
Query 78444 AATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGCC---GGTTAAT 78500
|| |||||| | | | || || ||| ||| ||| |||| |
Sbjct 241 CATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG---AGGAGCCAGGGGTTGAC 297
Query 78501 CATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAA 78560
| |||||||||||| ||| ||||| ||||||||||| |||||||||||||||
Sbjct 298 GACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAA 357
Query 78561 AGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620
||||||||| || | |||||| |||||| ||||||||||| || ||| | ||
Sbjct 358 CGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAG 417
Query 78621 AGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT----TAGGCC--GTCCCAAAATTC 78674
|| || || | || ||| | |||| |||| | |||| |||||| | ||
Sbjct 418 CGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTC 477
Query 78675 ATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGA------ 78728
||| || || ||||| ||| || | || || | | ||| |||||
Sbjct 478 CGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCC 537
Query 78729 ---CCCCTTGAACGTCTCGTAAGATCCCTCCTC------CTTGGCGA----GT--TCGC- 78772
| ||||| ||| ||| | || ||| | ||||| || ||||
Sbjct 538 GTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGCGATGGCGTAGTCGCG 597
Query 78773 --------------ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818
| ||||||| | || |||||||| | | |||||||||
Sbjct 598 GGCCATGTCGCACGACGACTCGATC---GCGGCGTGGTAGATCGTCTCGAAGATCTGGAC 654
Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878
|||||| | |||||||| || | |||||||| || | ||| ||||||| | |||||
Sbjct 655 GTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCATGAAGGCGTCGGC 714
Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCCT 78937
|| ||||| || |||||| ||||||| |||||||| | |||||| | || |||| |||
Sbjct 715 GAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTC-GGCCTCCT 773
Query 78938 CGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990
| ||||| |||| ||||||| |||||||| ||| ||||||||||
Sbjct 774 TGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGACGACC 826
Score = 170 bits (188), Expect = 2e-37
Identities = 541/836 (65%), Gaps = 62/836 (7%)
Strand=Plus/Minus
Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073
|||||||||| || |||| ||| ||||||| |||| ||||| | ||| |||
Sbjct 826 GGTCGTCACGTACAACTTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 767
Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130
||||| || | |||||||| ||||||| ||||| || ||||| || |||||
Sbjct 766 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 710
Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190
|| |||||| ||| | || | |||||| ||| |||||||| | ||||||
Sbjct 709 CGCCTTCATGGCCCTCCGTCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTCCA 650
Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA--------------A 20236
||||||||| | | |||||||| || || | |||||||| |
Sbjct 649 GATCTTCGAGACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCCCGCGACTA 590
Query 20237 C----TCGCCAAA------GAGGACGGCCCGTACGAGACGTTCAAGGGG---------TC 20277
| ||||| | ||| |||| |||| ||| ||||| | ||
Sbjct 589 CGCCATCGCCCACCCCGGCGAGCCCGGCTGGTACCCCTCGTACAAGGAGAACGGCGGCTC 530
Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337
||||||| | | || || | ||| ||| ||||| |||||| || || | ||
Sbjct 529 GCCCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCGACGGACCTGTG 470
Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391
| | ||| | |||| |||| | ||||| | ||||||||| | ||
Sbjct 469 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTCTG 410
Query 20392 CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCC 20451
|||||| ||||||||||| |||||| |||||| | || ||||||||| ||||||||
Sbjct 409 CGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCC 350
Query 20452 GTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAA 20511
||||||| ||||||||||| || ||| || ||||| |||||| | || |||
Sbjct 349 GTACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAACC- 291
Query 20512 GCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATG 20567
||||| |||||||| | | || ||||| | || |||||
Sbjct 290 ---CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACA 234
Query 20568 AAATTGTC-CGAGC--CGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACCTCA 20621
|| || || | |||| || ||||| | | |||||| | | ||||
Sbjct 233 CGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGTATCCCTGATGAGCTCA 177
Query 20622 AGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCG 20681
|| ||| |||| ||| || ||||| ||| | |||||| | |||||||| | | ||||
Sbjct 176 AGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCG 117
Query 20682 ATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCC 20741
| ||||| || | |||||||||||| ||||||||||| ||| | | | |||| |
Sbjct 116 ACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCA 57
Query 20742 TGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGC 20797
||||| |||| | || ||||| | ||||||||| | ||||| ||||||||||||
Sbjct 56 TGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGC 1
>seq5
Length=1355845
Score = 89.7 bits (98), Expect = 6e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 20703 AGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGC 20762
|||| ||||||||||| ||| | | | |||| | ||||| |||| | || ||||
Sbjct 125978 AGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGC 125919
Query 20763 ATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCC 20821
| | ||||||||| | ||||| |||||||||||||||||||| || || ||||| |||
Sbjct 125918 ACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 125860
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242
|||||| || || | |||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 125860 GGCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTG 125919
Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACT 78301
||| || |||| |||| |||| | | | || |||||||||||| ||||
Sbjct 125920 CATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACT 125978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524196622720
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