Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq50 358 7e-94 seq32 132 5e-26 seq12 107 2e-18 seq6 107 2e-18 seq5 87.8 2e-12 >seq50 Length=15404 Score = 358 bits (396), Expect = 7e-94 Identities = 515/719 (72%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||| ||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 1847 TCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATCG--AGACGTA 1790 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | |||||||||||||||| |||| || || |||||||| || || Sbjct 1789 CAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAACGCCGGCAC 1730 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 1729 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 1670 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || |||||| | Sbjct 1669 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGCGGCATCGGTCT 1610 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| |||| | ||| || ||||||||| | | Sbjct 1609 CTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGA 1551 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | ||||||||| || || |||||| ||||||| | Sbjct 1550 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTCGACCAGGGCG 1491 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 1490 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 1431 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 1430 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 1371 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || |||||||| |||||||||||| | || ||| || ||| || ||| || Sbjct 1370 TTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 1311 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | ||||| |||| ||||||||||| | |||||||| || ||||| || ||| Sbjct 1310 TCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 1251 Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 ||| ||| || ||| | |||| ||| |||| | | || | || | Sbjct 1250 TGT-TCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCGCCCAGAAGCTC 1192 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || |||||| || |||||| |||||||| | || | |||| ||||||||| Sbjct 1191 TGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 1133 Score = 141 bits (156), Expect = 1e-28 Identities = 303/440 (69%), Gaps = 21/440 (5%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || ||||| ||||| ||||||||||| ||||||| | Sbjct 432 GGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTT 373 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct 372 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCC 313 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || | || ||| | | ||| || ||||| | | | | Sbjct 312 GGCGAGTT--CCAAG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTG 256 Query 55655 TGGAAC-CCGCAGATCAAG---ACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--- 55707 |||||| ||| ||| ||| ||| || | || ||| || || ||||||| Sbjct 255 TGGAACGACGC-GATGAAGAACACGATCATCGCGCACAAC---GGCTCGATCCAGAACGT 200 Query 55708 TCTGGAGATTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | | || ||| || | |||||| || ||| ||||||||||||||| | |||| Sbjct 199 CCCCGGTATCCCTGATGAG-CTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGA 141 Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 || ||| | || ||| | || || || || |||| |||||||||||| ||||| || Sbjct 140 AG-GTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTC 82 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 ||| || | | | || | |||| || | | ||||||||||| ||||| ||| Sbjct 81 AACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGG 22 Query 55886 AAGAAGGGACTCAAGACGGG 55905 |||||||| ||||||||||| Sbjct 21 AAGAAGGGTCTCAAGACGGG 2 >seq32 Length=59280 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||||||| |||||||| ||| || ||||| || ||||| Sbjct 22802 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 22861 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 22862 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 22921 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||||||||| || || || |||||||| ||||||| ||||||| |||||| ||| Sbjct 22922 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 22981 Query 152209 G 152209 | Sbjct 22982 G 22982 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || ||||||||||||||| || Sbjct 22802 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 22861 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 22862 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 22921 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||||| || || || ||||| ||||||| ||||||| | ||||||| Sbjct 22922 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 22981 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 22982 GAAAGCTGGCCGACCT 22997 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 25102 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 25159 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 25160 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 25206 >seq12 Length=734256 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| | ||| ||||| || ||||| | |||||||| || || | ||| Sbjct 158174 AACTCGCGGACGGGGTGGGTCTCGCCGGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTGC 158115 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 ||||||||| |||||||| ||||||| || || | ||||| |||||||||||||| || Sbjct 158114 TGGAGCATGCGCCACATGCCCTCGACATAGTCGCGAGCGTGTCCCCAGTCGCGCTTCGCG 158055 Query 159064 TCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 158054 TCGAGGTTACCGAG 158041 >seq6 Length=1028338 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGC-T 159001 ||||||||||| | ||||||||| || || || | ||| |||| || || | || | | Sbjct 206716 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 206774 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | || | |||| |||||||| | |||||||| || ||||||| |||||||||||||||| Sbjct 206775 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 206834 Query 159062 CATCCATGTTCCCGAG 159077 |||| | ||| ||||| Sbjct 206835 CATCGAGGTTGCCGAG 206850 Score = 102 bits (112), Expect = 9e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||||||||| || || | | || | || || Sbjct 206704 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 206763 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 206764 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 206822 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 206823 AGTCGCGCTTGGCATCGAGGTTGCCGAG 206850 >seq5 Length=1355845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 55865 TCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || || ||| Sbjct 125925 TCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACC 125866 Query 55925 CGCGCC 55930 |||||| Sbjct 125865 CGCGCC 125860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215398062400