Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq50 203 4e-47 seq18 176 5e-39 seq32 165 9e-36 seq9 125 8e-24 seq4 116 4e-21 seq2 111 2e-19 seq19 98.7 1e-15 seq5 86.0 7e-12 >seq50 Length=15404 Score = 203 bits (224), Expect = 4e-47 Identities = 491/737 (67%), Gaps = 15/737 (2%) Strand=Plus/Plus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | ||| | || ||||||||||| | || ||||||||||| | Sbjct 1130 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 1189 Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || | || ||| | | | | | | ||| | ||||| ||||||| | Sbjct 1190 CAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCT----CATACTTCTC 1245 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 | | |||| | | ||||| | | |||| | || |||| | || |||| ||||| Sbjct 1246 GAACAGCTCCTT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGC 1304 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256 | | ||| |||||||| || | ||| ||| || |||||| ||| || ||||||| Sbjct 1305 AGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGA 1364 Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316 |||| ||||| |||||| ||| ||||||| | || ||||| ||| | |||| Sbjct 1365 GGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 1424 Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG-- 81374 | || || | |||||| || ||||| ||||| || || | ||||| || ||| ||| Sbjct 1425 GGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCT 1484 Query 81375 -ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||| ||||||| |||||| || || || ||| | || || | ||| ||||||| Sbjct 1485 TGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGA 1544 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA 81493 | || | || | |||||||| || |||| ||| || | ||||| | ||| || Sbjct 1545 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGA 1604 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| || | | ||| || || | || ||| || | || || | Sbjct 1605 TCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGT 1664 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 | || |||||||| || | ||||| || | | | ||| || || | ||| ||| Sbjct 1665 AGATGCCCTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCACGACGAGAGCTGCGGG 1723 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672 | |||||| ||||| || || || | ||||| | || || || | ||||| Sbjct 1724 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATG 1783 Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732 |||| || || || | |||| ||| ||||| ||||| || |||| || |||||| Sbjct 1784 AGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGC 1843 Query 81733 ATAAACATGTACTGGGG 81749 || | ||||| ||| || Sbjct 1844 ATGAGCATGTGCTGCGG 1860 >seq18 Length=397515 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||||| Sbjct 320453 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 320512 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 320513 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 320572 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| |||||| || | || || || Sbjct 320573 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 320632 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || ||||||| ||||| || Sbjct 320633 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 320679 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || || ||||||||||| ||| | |||| || | ||||| || || |||||| Sbjct 320781 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 320840 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||||||||| ||||| ||||||||||| | || || || || ||||| ||||||||| Sbjct 320841 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAT 320900 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | |||||| || | |||||||| ||||| ||||| || || ||||| || || ||||| Sbjct 320901 GGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 320960 Query 27622 CTTCGCGGTGG 27632 || ||||| || Sbjct 320961 CTCCGCGGAGG 320971 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| |||||||| ||||||||||| | || || || Sbjct 321114 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCG 321173 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 321174 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 321233 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 321234 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 321262 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| || || || ||||||||||| | || || || Sbjct 321414 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCG 321473 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||| | || || || ||| || || | ||||||||||| || Sbjct 321474 GGGAAGCAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACC 321533 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || || ||| | | ||||||||| Sbjct 321534 CTGCACCTCGTTTTGAGGTTGCGCGGTGGA 321563 >seq32 Length=59280 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 22997 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 22938 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 ||||||||||||| || ||| ||| || |||||||| ||||| || ||| | ||| Sbjct 22937 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 22878 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 22877 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 22818 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 |||||||||||||||| |||| |||| | ||||||| | | ||| |||||||||| Sbjct 22817 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 22760 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| || | ||| | ||| |||||||| ||| | |||||||| Sbjct 22759 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 22711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 25212 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 25153 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 ||| || || ||||||||||| || |||||||| || |||||||||||| Sbjct 25152 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 25102 >seq9 Length=941111 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| ||||||||||| || || || || Sbjct 137287 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCG 137346 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| || || || | |||||| || || |||| ||| || || Sbjct 137347 GGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACC 137406 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||| || ||||| || Sbjct 137407 CTTCATCTCGTCTTGCGCCTACGCGGCGG 137435 >seq4 Length=1400164 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| |||||||||||||| || || || Sbjct 474422 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 474363 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 474362 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 474303 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 474302 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 474274 Score = 105 bits (116), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| ||||| || ||||||||||| | || || || Sbjct 474112 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 474053 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 474052 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 473994 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 473993 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 473964 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| ||||| || ||||||||||| | || || || Sbjct 472950 AAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 472891 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 472890 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 472832 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 472831 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 472802 >seq2 Length=1536035 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| | || || || Sbjct 485065 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCG 485124 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || |||| ||||| || || Sbjct 485125 GGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACC 485184 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | |||||||||||||| Sbjct 485185 CTCCACCTCGTCCTCCGTCTTCGCGGTGG 485213 >seq19 Length=354189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || ||||| Sbjct 127394 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 127453 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || | || ||||| || || Sbjct 127454 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 127513 Query 27604 CTTCATCTAGTC 27615 ||||| || ||| Sbjct 127514 CTTCACCTCGTC 127525 >seq5 Length=1355845 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || |||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 125861 GCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 125920 Query 80092 ATAGAACTGAGCTTCGC 80108 || || |||||| ||| Sbjct 125921 ATCGACGTGAGCTGCGC 125937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309772658560