Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq18 125 6e-24
seq4 87.8 2e-12
>seq18
Length=397515
Score = 125 bits (138), Expect = 6e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || || || || ||||||||| | || || || || || || |||
Sbjct 320451 CCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGT 320510
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| |||| || | ||||| || ||||| ||||| || ||||| || ||||| |
Sbjct 320511 CGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACC 320570
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| ||||| || || | ||| || || || | || || || || |||| |||||||
Sbjct 320571 AGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACA 320630
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || |||||||||||| | || | || ||||| | || || |||||
Sbjct 320631 ACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGCAT 320682
Score = 105 bits (116), Expect = 6e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083
|| || || || || || |||||||| |||| || | ||||| || ||||| |||
Sbjct 321372 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321431
Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143
|| || ||||| || ||||| || ||||| || || | ||| || || || | || |||
Sbjct 321432 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 321491
Query 27144 AGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202
| || || ||| |||||||||||||||||||| |||||| | || | |||||| |
Sbjct 321492 GGA-CGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 321550
Query 27203 TTTGCGGGGTGG 27214
||||| |||||
Sbjct 321551 GTTGCGCGGTGG 321562
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083
|| || || || || || |||| ||| |||| || | ||||| || ||||| |||
Sbjct 321072 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 321131
Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143
|| || ||||| || ||||| || ||||| || || | ||| || || || | || |||
Sbjct 321132 AAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 321191
Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
|| || |||| ||||||||||| || || ||||||||| | || | || |||||
Sbjct 321192 GGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 321251
Query 27204 TTGCGGGGTGGCAT 27217
| || || |||||
Sbjct 321252 CTCCGCGGAGGCAT 321265
>seq4
Length=1400164
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083
|| || || || || || |||||||| |||| || | ||||| || ||||| |||
Sbjct 474154 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 474095
Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143
|| || ||||| || || || || ||||| || || | ||||||||| || | || |||
Sbjct 474094 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 474035
Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
| || | ||| || |||||||| ||||||||||| | || |||| | |||
Sbjct 474034 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 473975
Query 27204 TTGCGGGGTGGCA 27216
| || |||||||
Sbjct 473974 CTCCGCGGTGGCA 473962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434917921589760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |